Northern New Mexico post-fire refugia data

Research Data Publication File Index

File Folder Description
_metadata_RDS-2017-0005.html   Metadata file in HTML format containing a description of the content, quality, and other characteristics of the data.
_metadata_RDS-2017-0005.xml   Metadata file in Extensible Markup Language (XML) format containing a description of the content, quality, and other characteristics of the data.
CerroGrandeKernel.tif \Data\raster.archive Geo-TIF file containing the kernel raster (i.e., refugial gradient) derived from the delta Normalized Burn Ratio (dNBR) data for the 2000 Cerro Grande fire.
DomeKernel.tif \Data\raster.archive Geo-TIF file containing the kernel raster (i.e., refugial gradient) derived from the dNBR data for the 1996 Dome fire.
LaMesa-dNDVI.tif \Data\raster.archive Geo-TIF file containing the delta Normalized Difference Vegetation Index (dNDVI) data for the 1977 La Mesa fire.
LaMesaKernel.tif \Data\raster.archive Geo-TIF file containing the kernel raster (i.e., refugial gradient) derived from the delta Normalized Difference Vegetation Index (dNDVI) data for the 1977 La Mesa fire.
LaMesa-perimeter.tif \Data\raster.archive Geo-TIF file containing the perimeter (burned area mask) in raster format.
LasConchasDEM.tif \Data\raster.archive Geo-TIF file containing digital elevation data for the Las Conchas study area.
LasConchas-dNBR.tif \Data\raster.archive Geo-TIF file containing the delta Normalized Burn Ratio (dNBR) for the 2011 Las Conchas fire.
LasConchasKernel.tif \Data\raster.archive Geo-TIF file containing the kernel raster (i.e., refugial gradient) derived from the dNBR data for the 2011 Las Conchas fire.
Las-Conchas-scene_prep_log.txt \Data\raster.archive Comma-delimited ASCII text file containing details of dNBR input data for LasConchasKernel.tif
DEM_source_metadata.tif \Data\raster.archive Metadata file in Extensible Markup Language (XML) for 'Elevation Derivatives for National Applications (EDNA) Filled Digital Elevation Model (DEM)' created by U.S. Geological Survey/Earth Resources Observation and Science (USGS/EROS). This metadata file contains information on the original DEM that was subset for our study area, which resulted in LasConchasDEM.tif.
mds.data.57.dictionary.txt \Data\script.archive\data.files ASCII text file containing variable definitions for mds.data.57.txt.
mds.data.57.txt \Data\script.archive\data.files Space-delimited ASCII text file containing observations of species cover at field locations included in the study, and samples of the terrain spatial data.
z.bio.day.dictionary.txt \Data\script.archive\data.files ASCII text file containing variable definitions for z.bio.day.txt.
z.bio.day.txt \Data\script.archive\data.files Space-delimited ASCII text file containing random sample of terrain and bioclim data and a binary variable indicating day of burning.
calls.csv \Data\script.archive\terrain.scripts Comma-delimited ASCII text file containing the list of metrics to call for each grid.
run.las.conchas.terrain.R \Data\script.archive\terrain.scripts ASCII text file containing an R script which manages calculation of multiple terrain metrics on many grids for Las Conchas.
run.metric.R \Data\script.archive\terrain.scripts ASCII text file containing an R script which runs one metric or multiple calls for one grid.
terrain.function.calls.R \Data\script.archive\terrain.scripts ASCII text file containing an R script of wrapper functions for terrain based metrics (hydrology, morphology, anemology).
1.run.kernels1.R \Data\script.archive ASCII text file containing an R script which generates Gaussian kernels for all areas at one scale (i.e., window size).
2.run.kernels2.R \Data\script.archive ASCII text file containing an R script which generates Gaussian kernels at five sacles (i.e., window sizes) for Las Conchas.
3.sample.rasters.R \Data\script.archive ASCII text file containing an R script which outputs values of kernels and terrain metrics at random points and at field plot locations.
4.sample.bioclim.R \Data\script.archive ASCII text file containing an R script which outputs values of bioclim rasters at random points and at field plot locations.
5.sample.burn.days.R \Data\script.archive ASCII text file containing an R script which outputs value for day of burning at random point locations.
6.bioclim.gams.lasconchas.R \Data\script.archive ASCII text file containing an R script which runs generalized additive models using the random sample data.
7.assemble.field.raster.data.R \Data\script.archive ASCII text file containing an R script which assembles the species, kernel and terrain data for field plot locations.
8.MDS.lasconchas.R \Data\script.archive ASCII text file containing an R script which performs multidimensional scaling (mds) analysis and outputs plots of the species ordination overlaid on the Las Conchas kernel (refugial) gradient.
9.refugia.stats.species.R \Data\script.archive ASCII text file containing an R script which summarizes the species data (i.e., mean, min, max position on the Las Conchas gradient).
10.kernel.changes.R \Data\script.archive ASCII text file containing an R script which summarizes changes in kernels between past fires and Las Conchas, looks at species/tree cover data at these sites and id places with relatively high differences in refugial gradient value.