Effects of laminated root rot infection level and chemical fumigants on survival and growth of Douglas-fir near Apiary, Oregon
Metadata:
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Identification_Information:
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Citation:
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Citation_Information:
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Originator: Harrington, Constance A.
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Originator: Thies, Walter G.
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Publication_Date: 2020
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Title:
Effects of laminated root rot infection level and chemical fumigants on survival and growth of Douglas-fir near Apiary, Oregon- Geospatial_Data_Presentation_Form: tabular digital data
- Publication_Information:
- Publication_Place: Fort Collins, CO
- Publisher: Forest Service Research Data Archive
- Online_Linkage: https://doi.org/10.2737/RDS-2020-0052
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Description:
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Abstract:
- Laminated root rot caused by Coniferiporia weirii is a significant disease of western conifers; it is important to understand the effects of the disease on tree growth and survival and, for some management objectives, to develop treatments that will reduce those effects. This study was conducted in a 47-year-old Douglas-fir (Pseudotsuga menziesii) stand in northwest Oregon (near Apiary) between 1981 and 1991 (Harrington and Thies 2007). We evaluated the effects of root system infection on diameter and height growth, and also evaluated the effects of nine fumigation treatments on tree growth. Data include, but are not limited to, tree height, diameter at breast height, annual growths, vigor ratings and root disease infection rates.
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Purpose:
- Coniferiporia weirii, the cause of laminated root rot, is a widespread root pathogen of conifer species throughout the northwestern United States and British Columbia, Canada. The fungus attacks live roots and can cause tree death either directly, by reducing the amount of functioning root system, or indirectly, by increasing tree susceptibility to windthrow. Previous management strategies to reduce the effects of laminated root rot focused on favoring tree species that are immune or resistant to the disease or reducing inoculum by stump removal. This study tested chemical injection as a possible alternative control method. The study also looked carefully at the effects of root infection levels (determined by root excavation and evaluation) and tree growth prior to excavation.
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Supplemental_Information:
- Other aspects of this study are also described in Thies and Nelson (1996).
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Time_Period_of_Content:
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Time_Period_Information:
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Range_of_Dates/Times:
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Beginning_Date: 1981
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Ending_Date: 1991
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Currentness_Reference:
- Ground condition
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Status:
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Progress: Complete
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Maintenance_and_Update_Frequency: None planned
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Spatial_Domain:
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Description_of_Geographic_Extent:
- This study took place in Columbia County Oregon. The approximate elevation was 420 meters.
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Bounding_Coordinates:
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West_Bounding_Coordinate: -123.0
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East_Bounding_Coordinate: -122.5
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North_Bounding_Coordinate: 46.0
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South_Bounding_Coordinate: 45.5
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Keywords:
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Theme:
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Theme_Keyword_Thesaurus: ISO 19115 Topic Category
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Theme_Keyword: farming
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Theme:
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Theme_Keyword_Thesaurus: National Research & Development Taxonomy
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Theme_Keyword: Natural Resource Management & Use
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Theme_Keyword: Forest management
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Theme:
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Theme_Keyword_Thesaurus: None
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Theme_Keyword: tree growth
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Theme_Keyword: height growth
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Theme_Keyword: diameter growth
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Theme_Keyword: Douglas-fir
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Theme_Keyword: Pseudotsuga menziesii
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Theme_Keyword: laminated root rot
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Theme_Keyword: Phellinus weirii
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Theme_Keyword: Coniferiporia weirii
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Theme_Keyword: fumigant injection
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Theme_Keyword: chemical control
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Theme_Keyword: root infection
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Theme_Keyword: survival
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Place:
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Place_Keyword_Thesaurus: None
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Place_Keyword: northwestern Oregon
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Place_Keyword: Columbia County
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Place_Keyword: Oregon Coast Range
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Taxonomy:
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Keywords/Taxon:
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Taxonomic_Keyword_Thesaurus:
- None
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Taxonomic_Keywords: fungi
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Taxonomic_Keywords: plants
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Taxonomic_System:
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Classification_System/Authority:
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Classification_System_Citation:
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Citation_Information:
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Originator: ITIS
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Publication_Date: 2019
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Title:
Integrated Taxonomic Information System- Geospatial_Data_Presentation_Form: database
- Other_Citation_Details:
- Retrieved [October, 4, 2019]
- Online_Linkage: https://www.itis.gov
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Classification_System_Modifications:
- All taxonomic classification provided below is from ITIS, except for Coniferiporia weirii (Kirk 2020), which was formerly known as Phellinus weirii.
Kirk, P.M. (ed.) 2020. Species Fungorum Plus: Species Fungorum for CoL+ (version Feb 20120). In: Species 2000 & ITIS Catalogue of Life, 2020-08-01 Beta (Roskov, Y.; Ower, G.; Orrell, T.; Nicolson, D.; Bailly, N.; Kirk, P.M.; Bourgoin, T.; DeWalt, R.E.; Decock, W.; Nieukerken, E. van; Penev, L.; eds.). Digital resource at https://www.catalogueoflife.org/col. Species 2000: Naturalis, Leiden, the Netherlands. ISSN 2405-8858.
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Taxonomic_Procedures:
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Taxonomic_Classification:
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Taxon_Rank_Name: Empire
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Taxon_Rank_Value: Biovitae
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Applicable_Common_Name: Carbon-based lifeforms
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Taxonomic_Classification:
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Taxon_Rank_Name: Kingdom
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Taxon_Rank_Value: Plantae
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Applicable_Common_Name: plantes
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Applicable_Common_Name: Planta
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Applicable_Common_Name: Vegetal
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Applicable_Common_Name: plants
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Taxonomic_Classification:
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Taxon_Rank_Name: Subkingdom
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Taxon_Rank_Value: Viridiplantae
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Applicable_Common_Name: green plants
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Taxonomic_Classification:
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Taxon_Rank_Name: Infrakingdom
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Taxon_Rank_Value: Streptophyta
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Applicable_Common_Name: land plants
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Taxonomic_Classification:
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Taxon_Rank_Name: Superdivision
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Taxon_Rank_Value: Embryophyta
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Taxonomic_Classification:
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Taxon_Rank_Name: Division
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Taxon_Rank_Value: Tracheophyta
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Applicable_Common_Name: vascular plants
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Applicable_Common_Name: tracheophytes
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Taxonomic_Classification:
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Taxon_Rank_Name: Subdivision
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Taxon_Rank_Value: Spermatophytina
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Applicable_Common_Name: spermatophytes
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Applicable_Common_Name: seed plants
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Applicable_Common_Name: phanérogames
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Taxonomic_Classification:
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Taxon_Rank_Name: Class
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Taxon_Rank_Value: Pinopsida
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Applicable_Common_Name: conifers
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Taxonomic_Classification:
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Taxon_Rank_Name: Subclass
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Taxon_Rank_Value: Pinidae
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Taxonomic_Classification:
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Taxon_Rank_Name: Order
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Taxon_Rank_Value: Pinales
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Applicable_Common_Name: pines
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Taxonomic_Classification:
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Taxon_Rank_Name: Family
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Taxon_Rank_Value: Pinaceae
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Applicable_Common_Name: pines
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Taxonomic_Classification:
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Taxon_Rank_Name: Genus
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Taxon_Rank_Value: Pseudotsuga
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Applicable_Common_Name: Douglas-fir
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Taxonomic_Classification:
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Taxon_Rank_Name: Species
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Taxon_Rank_Value: Pseudotsuga menziesii
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Applicable_Common_Name: red fir
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Applicable_Common_Name: Douglas spruce
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Applicable_Common_Name: Oregon pine
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Applicable_Common_Name: Douglas-fir
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Taxonomic_Classification:
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Taxon_Rank_Name: Kingdom
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Taxon_Rank_Value: Fungi
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Applicable_Common_Name: champignons
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Applicable_Common_Name: Fungo
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Applicable_Common_Name: fungi
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Taxonomic_Classification:
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Taxon_Rank_Name: Subkingdom
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Taxon_Rank_Value: Dikarya
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Taxonomic_Classification:
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Taxon_Rank_Name: Division
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Taxon_Rank_Value: Basidiomycota
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Applicable_Common_Name: basidio's
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Applicable_Common_Name: basidiomycetes
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Applicable_Common_Name: club fungi
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Taxonomic_Classification:
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Taxon_Rank_Name: Subdivision
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Taxon_Rank_Value: Agaricomycotina
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Taxonomic_Classification:
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Taxon_Rank_Name: Class
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Taxon_Rank_Value: Agaricomycetes
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Taxonomic_Classification:
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Taxon_Rank_Name: Order
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Taxon_Rank_Value: Hymenochaetales
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Taxonomic_Classification:
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Taxon_Rank_Name: Family
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Taxon_Rank_Value: Hymenochaetaceae
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Taxonomic_Classification:
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Taxon_Rank_Name: Genus
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Taxon_Rank_Value: Coniferiporia
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Taxonomic_Classification:
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Taxon_Rank_Name: Species
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Taxon_Rank_Value: Coniferiporia weirii
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Access_Constraints: None
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Use_Constraints:
- These data were collected using funding from the U.S. Government and can be used without additional permissions or fees. If you use these data in a publication, presentation, or other research product please use the following citation:
Harrington, Constance A.; Thies, Walter G. 2020. Effects of laminated root rot infection level and chemical fumigants on survival and growth of Douglas-fir near Apiary, Oregon. Fort Collins, CO: Forest Service Research Data Archive. https://doi.org/10.2737/RDS-2020-0052
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Point_of_Contact:
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Contact_Information:
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Contact_Person_Primary:
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Contact_Person: David Thornton
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Contact_Organization: Pacific Northwest Research Station
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Contact_Address:
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Address_Type: mailing and physical
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Address: 3625 93rd Ave SW
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City: Olympia
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State_or_Province: WA
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Postal_Code: 98512
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Contact_Voice_Telephone: 360-754-5372
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Contact_Electronic_Mail_Address:
dave.thornton@usda.gov
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Data_Set_Credit:
- This project was funded by the USDA Forest Service, Pacific Northwest Research Station.
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Cross_Reference:
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Citation_Information:
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Originator: Harrington, Constance A.
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Originator: Thies, Walter G.
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Publication_Date: 2007
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Title:
Laminated root rot and fumigant injection affect survival and growth of Douglas-fir- Geospatial_Data_Presentation_Form: journal article
- Series_Information:
- Series_Name: Western Journal of Applied Forestry
- Issue_Identification: 22(3): 220-227
- Online_Linkage: https://doi.org/10.1093/wjaf/22.3.220
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Cross_Reference:
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Citation_Information:
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Originator: Thies, Walter G.
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Originator: Nelson, Earl E.
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Publication_Date: 1996
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Title:
Reducing Phellinus weirii inoculum by applying fumigants to living Douglas-fir- Geospatial_Data_Presentation_Form: journal article
- Series_Information:
- Series_Name: Canadian Journal of Forest Research
- Issue_Identification: 26(7): 1158-1165
- Online_Linkage: https://doi.org/10.1139/x26-129
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Data_Quality_Information:
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Attribute_Accuracy:
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Attribute_Accuracy_Report:
- Measurements were taken by trained, experienced field crews; however, field measurements were not verified unless triggered by data editing programs.
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Logical_Consistency_Report:
- Data were edited for inconsistencies plotting repeat or related measurements (such as height at time A versus height at time B or tree diameter versus tree height) and field checked if appropriate (e.g., tree height appeared to have shrunk from the previous measurement and a condition code such as dead top was not recorded).
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Completeness_Report:
- Unless otherwise noted in the variables descriptions, a blank cell means not measured.
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Lineage:
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Methodology:
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Methodology_Type: Field
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Methodology_Description:
- This study was conducted in a 47-year old, naturally regenerated Douglas-fir stand in the northern Oregon Coast Range. The study began in 1981 and originally included 170 candidate living trees that were classified as: 1) infected (Coniferiporia weirii found on root surfaces), 2) likely infected (infected tree within 5 meters, crowns with short terminal and lateral shoot extension and short, chlorotic needles, but C. weirii not observed on the roots; or 3) uninfected (no infected tree within 25 m, vigorous crowns, and C. weirii not observed on roots). These health classes were used as surrogates for infection levels and assigned to five reps (blocks) based on tree location in the study area. Nine treatments were randomly assigned to individual trees within each block. The nine treatments were as follows: three dosages of methylisothiocyanate (MITC), four dosages of chloropicrin (trichloronitromethane), 3) one dosage of Vorlex [20% MITC, 80% chlorinated C_3 hydrocarbons (v/v)], and a control. The fumigants were applied by inserting them into holes drilled into the base of live trees.
Trees were checked annually for survival and measured using diameter tapes and laser height equipment periodically. Surviving trees were felled at the end of the trial and past height and diameter growth determined. In addition, root system were excavated and infection levels determined. Many pictures were taken of the tree cross sections to document types of damage due to fumigant injections.
For more details see Harrington and Thies (2007) as well as Thies and Nelson (1996).
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Methodology_Citation:
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Citation_Information:
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Originator: Harrington, Constance A.
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Originator: Thies, Walter G.
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Publication_Date: 2007
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Title:
Laminated root rot and fumigant injection affect survival and growth of Douglas-fir- Geospatial_Data_Presentation_Form: journal article
- Series_Information:
- Series_Name: Western Journal of Applied Forestry
- Issue_Identification: 22(3): 220-227
- Online_Linkage: https://doi.org/10.1093/wjaf/22.3.220
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Methodology_Citation:
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Citation_Information:
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Originator: Thies, Walter G.
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Originator: Nelson, Earl E.
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Publication_Date: 1996
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Title:
Reducing Phellinus weirii inoculum by applying fumigants to living Douglas-fir- Geospatial_Data_Presentation_Form: journal article
- Series_Information:
- Series_Name: Canadian Journal of Forest Research
- Issue_Identification: 26(7): 1158-1165
- Online_Linkage: https://doi.org/10.1139/x26-129
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Source_Information:
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Source_Citation:
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Citation_Information:
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Originator: National Centers for Environmental Information, National Oceanic and Atmospheric Administration (NOAA)
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Publication_Date: 2005
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Title:
VERNONIA NUMBER 2, OR US: monthly precipitation- Geospatial_Data_Presentation_Form: tabular digital data
- Series_Information:
- Series_Name: Climate Data Online
- Issue_Identification: GHCND:USC00358884
- Other_Citation_Details:
- Downloaded file last updated on July 22, 2005
- Online_Linkage: https://www.ncdc.noaa.gov/cdo-web/datasets/GHCND/stations/GHCND:USC00358884/detail
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Type_of_Source_Media: Online
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Source_Time_Period_of_Content:
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Time_Period_Information:
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Range_of_Dates/Times:
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Beginning_Date: 1967
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Ending_Date: 2005
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Source_Currentness_Reference:
- Ground Condition
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Source_Citation_Abbreviation:
- NOAA
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Source_Contribution:
- Monthly total precipitation from 1967-2005 for Veronia 2 NOAA weather station in Oregon was obtained for 1967-2005.
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Process_Step:
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Process_Description:
- Monthly NOAA precipitation data were obtained to help provide insight into the data included in this data publication.
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Source_Used_Citation_Abbreviation:
- NOAA
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Process_Date: 2005
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Entity_and_Attribute_Information:
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Overview_Description:
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Entity_and_Attribute_Overview:
- Below you will find a list and description of the files available in this data publication.
NOTE: unless otherwise noted, a blank cell means not measured (or not applicable)
INFORMATIONAL FILES
\Data\RootRot_Codes.csv: Comma-delimited ASCII text file containing code descriptions for variables used in RootRot_Root_Data.csv and/or RootRot_Tree_Data.csv.
Variables include:
Code Name = name for code
Code Value = value for code
Description = complete description of the code value
\Data\RootRot_Root_Variables.csv: Comma-delimited ASCII text file containing variable descriptions for RootRot_Root_Data.csv.
Variables include:
Variable = name of variable
Description = description of variable
Units = variable units, if applicable
Code Name = name for code used to describe categorical values of the variable, if applicable
\Data\RootRot_Tree_Variables.csv: Comma-delimited ASCII text file containing variable descriptions for RootRot_Tree_Data.csv.
Variables include:
Variable = name of variable
Description = description of variable
Units = variable units, if applicable
Code Name = name for code used to describe categorical values of the variable, if applicable
DATA FILES
\Data\RootRot_Root_Data.csv: Comma-delimited ASCII text file containing information of individual roots showing signs of residual infection.
See \Data\RootRot_Root_Variables.csv for variable descriptions and \Data\RootRot_Codes.csv for code descriptions.
\Data\RootRot_Tree_Data.csv: Comma-delimited ASCII text file containing tree measurement data and Coniferiporia weirii root infection data from the Apiary Root Rot study. Data include, but are not limited to, tree height, diameter at breast height, annual growths, vigor ratings and root disease infection rates. See \Data\RootRot_Tree_Variables.csv for variable descriptions and \Data\RootRot_Codes.csv for code descriptions.
SUPPLEMENTAL FILES
\Supplements\Vernonia_Monthly_Precip.csv: Comma-delimited ASCII text file containing precipitation data from Vernonia, Oregon (Vernonia 2 NOAA weather station). Elevation: 630 feet, Latitude: 45.52 N, Longitude: 123.11 W (Apiary site: Elevation: 1,378 feet, Latitude: 46.01 N, Longitude: 123.04 W). NOTE: The first 15 rows contain header information and data begins on row 16.
Variables include:
Year = year (2-digit) of precipitation measured
Jan-Dec = total monthly precipitation in inches
Jan_Flag-Dec_Flag = flag for monthly measurement (a = 1 day missing, b = 2 days missing, c = 3 days, etc.; z = 26 or more days missing; A = Accumulations present)
Ann = total precipitation for the year in inches
\Supplements\PhotoScans\tree*.tif: Tagged Image Format files (23) containing images of cross sections with Coniferiporia weirii infection. The filename contains the tree tag number.
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Entity_and_Attribute_Detail_Citation:
- Harrington, Constance A.; Thies, Walter G. 2007. Laminated root rot and fumigant injection affect survival and growth of Douglas-fir. Western Journal of Applied Forestry 22(3): 220-227. https://doi.org/10.1093/wjaf/22.3.220
Thies, Walter G.; Nelson, Earl E. 1996. Reducing Phellinus weirii inoculum by applying fumigants to living Douglas-fir. Canadian Journal of Forest Research 26(7): 1158-1165. https://doi.org/10.1139/x26-129
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Distribution_Information:
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Distributor:
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Contact_Information:
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Contact_Organization_Primary:
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Contact_Organization: USDA Forest Service, Research and Development
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Contact_Position: Research Data Archivist
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Contact_Address:
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Address_Type: mailing and physical
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Address: 240 West Prospect Road
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City: Fort Collins
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State_or_Province: CO
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Postal_Code: 80526
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Country: USA
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Contact_Voice_Telephone: see Contact Instructions
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Contact Instructions: This contact information was current as of August 2020. For current information see Contact Us page on: https://doi.org/10.2737/RDS.
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Resource_Description: RDS-2020-0052
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Distribution_Liability:
- Metadata documents have been reviewed for accuracy and completeness. Unless otherwise stated, all data and related materials are considered to satisfy the quality standards relative to the purpose for which the data were collected. However, neither the author, the Archive, nor any part of the federal government can assure the reliability or suitability of these data for a particular purpose. The act of distribution shall not constitute any such warranty, and no responsibility is assumed for a user's application of these data or related materials.
The metadata, data, or related materials may be updated without notification. If a user believes errors are present in the metadata, data or related materials, please use the information in (1) Identification Information: Point of Contact, (2) Metadata Reference: Metadata Contact, or (3) Distribution Information: Distributor to notify the author or the Archive of the issues.
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Standard_Order_Process:
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Digital_Form:
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Digital_Transfer_Information:
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Format_Name: ASCII
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Format_Version_Number: see Format Specification
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Format_Specification:
- Comma-delimited ASCII text file (CSV)
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File_Decompression_Technique: Files zipped with 7-Zip 19.01
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Digital_Transfer_Option:
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Online_Option:
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Computer_Contact_Information:
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Network_Address:
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Network_Resource_Name:
https://doi.org/10.2737/RDS-2020-0052
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Digital_Form:
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Digital_Transfer_Information:
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Format_Name: TIFF
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Format_Version_Number: see Format Specification
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Format_Specification:
- Tagged Image File Format (TIF)
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File_Decompression_Technique: Files zipped with 7-Zip 19.01
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Digital_Transfer_Option:
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Online_Option:
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Computer_Contact_Information:
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Network_Address:
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Network_Resource_Name:
https://doi.org/10.2737/RDS-2020-0052
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Fees: None
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Metadata_Reference_Information:
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Metadata_Date: 20200828
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Metadata_Contact:
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Contact_Information:
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Contact_Organization_Primary:
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Contact_Organization: USDA Forest Service, Pacific Northwest Research Station
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Contact_Person: Constance Harrington
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Contact_Position: Research Forester
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Contact_Address:
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Address_Type: mailing and physical
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Address: 3625 93rd Ave SW
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City: Olympia
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State_or_Province: WA
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Postal_Code: 98512
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Country: USA
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Contact_Voice_Telephone: 360-753-7670
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Metadata_Standard_Name: FGDC Biological Data Profile of the Content Standard for Digital Geospatial Metadata
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Metadata_Standard_Version: FGDC-STD-001.1-1999
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