Effects of laminated root rot infection level and chemical fumigants on survival and growth of Douglas-fir near Apiary, Oregon

Metadata:

Identification_Information:
Citation:
Citation_Information:
Originator: Harrington, Constance A.
Originator: Thies, Walter G.
Publication_Date: 2020
Title:
Effects of laminated root rot infection level and chemical fumigants on survival and growth of Douglas-fir near Apiary, Oregon
Geospatial_Data_Presentation_Form: tabular digital data
Publication_Information:
Publication_Place: Fort Collins, CO
Publisher: Forest Service Research Data Archive
Online_Linkage: https://doi.org/10.2737/RDS-2020-0052
Description:
Abstract:
Laminated root rot caused by Coniferiporia weirii is a significant disease of western conifers; it is important to understand the effects of the disease on tree growth and survival and, for some management objectives, to develop treatments that will reduce those effects. This study was conducted in a 47-year-old Douglas-fir (Pseudotsuga menziesii) stand in northwest Oregon (near Apiary) between 1981 and 1991 (Harrington and Thies 2007). We evaluated the effects of root system infection on diameter and height growth, and also evaluated the effects of nine fumigation treatments on tree growth. Data include, but are not limited to, tree height, diameter at breast height, annual growths, vigor ratings and root disease infection rates.
Purpose:
Coniferiporia weirii, the cause of laminated root rot, is a widespread root pathogen of conifer species throughout the northwestern United States and British Columbia, Canada. The fungus attacks live roots and can cause tree death either directly, by reducing the amount of functioning root system, or indirectly, by increasing tree susceptibility to windthrow. Previous management strategies to reduce the effects of laminated root rot focused on favoring tree species that are immune or resistant to the disease or reducing inoculum by stump removal. This study tested chemical injection as a possible alternative control method. The study also looked carefully at the effects of root infection levels (determined by root excavation and evaluation) and tree growth prior to excavation.
Supplemental_Information:
Other aspects of this study are also described in Thies and Nelson (1996).
Time_Period_of_Content:
Time_Period_Information:
Range_of_Dates/Times:
Beginning_Date: 1981
Ending_Date: 1991
Currentness_Reference:
Ground condition
Status:
Progress: Complete
Maintenance_and_Update_Frequency: None planned
Spatial_Domain:
Description_of_Geographic_Extent:
This study took place in Columbia County Oregon. The approximate elevation was 420 meters.
Bounding_Coordinates:
West_Bounding_Coordinate: -123.0
East_Bounding_Coordinate: -122.5
North_Bounding_Coordinate: 46.0
South_Bounding_Coordinate: 45.5
Keywords:
Theme:
Theme_Keyword_Thesaurus: ISO 19115 Topic Category
Theme_Keyword: farming
Theme:
Theme_Keyword_Thesaurus: National Research & Development Taxonomy
Theme_Keyword: Natural Resource Management & Use
Theme_Keyword: Forest management
Theme:
Theme_Keyword_Thesaurus: None
Theme_Keyword: tree growth
Theme_Keyword: height growth
Theme_Keyword: diameter growth
Theme_Keyword: Douglas-fir
Theme_Keyword: Pseudotsuga menziesii
Theme_Keyword: laminated root rot
Theme_Keyword: Phellinus weirii
Theme_Keyword: Coniferiporia weirii
Theme_Keyword: fumigant injection
Theme_Keyword: chemical control
Theme_Keyword: root infection
Theme_Keyword: survival
Place:
Place_Keyword_Thesaurus: None
Place_Keyword: northwestern Oregon
Place_Keyword: Columbia County
Place_Keyword: Oregon Coast Range
Taxonomy:
Keywords/Taxon:
Taxonomic_Keyword_Thesaurus:
None
Taxonomic_Keywords: fungi
Taxonomic_Keywords: plants
Taxonomic_System:
Classification_System/Authority:
Classification_System_Citation:
Citation_Information:
Originator: ITIS
Publication_Date: 2019
Title:
Integrated Taxonomic Information System
Geospatial_Data_Presentation_Form: database
Other_Citation_Details:
Retrieved [October, 4, 2019]
Online_Linkage: https://www.itis.gov
Classification_System_Modifications:
All taxonomic classification provided below is from ITIS, except for Coniferiporia weirii (Kirk 2020), which was formerly known as Phellinus weirii.

Kirk, P.M. (ed.) 2020. Species Fungorum Plus: Species Fungorum for CoL+ (version Feb 20120). In: Species 2000 & ITIS Catalogue of Life, 2020-08-01 Beta (Roskov, Y.; Ower, G.; Orrell, T.; Nicolson, D.; Bailly, N.; Kirk, P.M.; Bourgoin, T.; DeWalt, R.E.; Decock, W.; Nieukerken, E. van; Penev, L.; eds.). Digital resource at https://www.catalogueoflife.org/col. Species 2000: Naturalis, Leiden, the Netherlands. ISSN 2405-8858.
Taxonomic_Procedures:
Taxonomic_Classification:
Taxon_Rank_Name: Empire
Taxon_Rank_Value: Biovitae
Applicable_Common_Name: Carbon-based lifeforms
Taxonomic_Classification:
Taxon_Rank_Name: Kingdom
Taxon_Rank_Value: Plantae
Applicable_Common_Name: plantes
Applicable_Common_Name: Planta
Applicable_Common_Name: Vegetal
Applicable_Common_Name: plants
Taxonomic_Classification:
Taxon_Rank_Name: Subkingdom
Taxon_Rank_Value: Viridiplantae
Applicable_Common_Name: green plants
Taxonomic_Classification:
Taxon_Rank_Name: Infrakingdom
Taxon_Rank_Value: Streptophyta
Applicable_Common_Name: land plants
Taxonomic_Classification:
Taxon_Rank_Name: Superdivision
Taxon_Rank_Value: Embryophyta
Taxonomic_Classification:
Taxon_Rank_Name: Division
Taxon_Rank_Value: Tracheophyta
Applicable_Common_Name: vascular plants
Applicable_Common_Name: tracheophytes
Taxonomic_Classification:
Taxon_Rank_Name: Subdivision
Taxon_Rank_Value: Spermatophytina
Applicable_Common_Name: spermatophytes
Applicable_Common_Name: seed plants
Applicable_Common_Name: phanérogames
Taxonomic_Classification:
Taxon_Rank_Name: Class
Taxon_Rank_Value: Pinopsida
Applicable_Common_Name: conifers
Taxonomic_Classification:
Taxon_Rank_Name: Subclass
Taxon_Rank_Value: Pinidae
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Pinales
Applicable_Common_Name: pines
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Pinaceae
Applicable_Common_Name: pines
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Pseudotsuga
Applicable_Common_Name: Douglas-fir
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Pseudotsuga menziesii
Applicable_Common_Name: red fir
Applicable_Common_Name: Douglas spruce
Applicable_Common_Name: Oregon pine
Applicable_Common_Name: Douglas-fir
Taxonomic_Classification:
Taxon_Rank_Name: Kingdom
Taxon_Rank_Value: Fungi
Applicable_Common_Name: champignons
Applicable_Common_Name: Fungo
Applicable_Common_Name: fungi
Taxonomic_Classification:
Taxon_Rank_Name: Subkingdom
Taxon_Rank_Value: Dikarya
Taxonomic_Classification:
Taxon_Rank_Name: Division
Taxon_Rank_Value: Basidiomycota
Applicable_Common_Name: basidio's
Applicable_Common_Name: basidiomycetes
Applicable_Common_Name: club fungi
Taxonomic_Classification:
Taxon_Rank_Name: Subdivision
Taxon_Rank_Value: Agaricomycotina
Taxonomic_Classification:
Taxon_Rank_Name: Class
Taxon_Rank_Value: Agaricomycetes
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Hymenochaetales
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Hymenochaetaceae
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Coniferiporia
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Coniferiporia weirii
Access_Constraints: None
Use_Constraints:
These data were collected using funding from the U.S. Government and can be used without additional permissions or fees. If you use these data in a publication, presentation, or other research product please use the following citation:

Harrington, Constance A.; Thies, Walter G. 2020. Effects of laminated root rot infection level and chemical fumigants on survival and growth of Douglas-fir near Apiary, Oregon. Fort Collins, CO: Forest Service Research Data Archive. https://doi.org/10.2737/RDS-2020-0052
Point_of_Contact:
Contact_Information:
Contact_Person_Primary:
Contact_Person: David Thornton
Contact_Organization: Pacific Northwest Research Station
Contact_Address:
Address_Type: mailing and physical
Address: 3625 93rd Ave SW
City: Olympia
State_or_Province: WA
Postal_Code: 98512
Contact_Voice_Telephone: 360-754-5372
Contact_Electronic_Mail_Address: dave.thornton@usda.gov
Data_Set_Credit:
This project was funded by the USDA Forest Service, Pacific Northwest Research Station.
Cross_Reference:
Citation_Information:
Originator: Harrington, Constance A.
Originator: Thies, Walter G.
Publication_Date: 2007
Title:
Laminated root rot and fumigant injection affect survival and growth of Douglas-fir
Geospatial_Data_Presentation_Form: journal article
Series_Information:
Series_Name: Western Journal of Applied Forestry
Issue_Identification: 22(3): 220-227
Online_Linkage: https://doi.org/10.1093/wjaf/22.3.220
Cross_Reference:
Citation_Information:
Originator: Thies, Walter G.
Originator: Nelson, Earl E.
Publication_Date: 1996
Title:
Reducing Phellinus weirii inoculum by applying fumigants to living Douglas-fir
Geospatial_Data_Presentation_Form: journal article
Series_Information:
Series_Name: Canadian Journal of Forest Research
Issue_Identification: 26(7): 1158-1165
Online_Linkage: https://doi.org/10.1139/x26-129
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Data_Quality_Information:
Attribute_Accuracy:
Attribute_Accuracy_Report:
Measurements were taken by trained, experienced field crews; however, field measurements were not verified unless triggered by data editing programs.
Logical_Consistency_Report:
Data were edited for inconsistencies plotting repeat or related measurements (such as height at time A versus height at time B or tree diameter versus tree height) and field checked if appropriate (e.g., tree height appeared to have shrunk from the previous measurement and a condition code such as dead top was not recorded).
Completeness_Report:
Unless otherwise noted in the variables descriptions, a blank cell means not measured.
Lineage:
Methodology:
Methodology_Type: Field
Methodology_Description:
This study was conducted in a 47-year old, naturally regenerated Douglas-fir stand in the northern Oregon Coast Range. The study began in 1981 and originally included 170 candidate living trees that were classified as: 1) infected (Coniferiporia weirii found on root surfaces), 2) likely infected (infected tree within 5 meters, crowns with short terminal and lateral shoot extension and short, chlorotic needles, but C. weirii not observed on the roots; or 3) uninfected (no infected tree within 25 m, vigorous crowns, and C. weirii not observed on roots). These health classes were used as surrogates for infection levels and assigned to five reps (blocks) based on tree location in the study area. Nine treatments were randomly assigned to individual trees within each block. The nine treatments were as follows: three dosages of methylisothiocyanate (MITC), four dosages of chloropicrin (trichloronitromethane), 3) one dosage of Vorlex [20% MITC, 80% chlorinated C_3 hydrocarbons (v/v)], and a control. The fumigants were applied by inserting them into holes drilled into the base of live trees.

Trees were checked annually for survival and measured using diameter tapes and laser height equipment periodically. Surviving trees were felled at the end of the trial and past height and diameter growth determined. In addition, root system were excavated and infection levels determined. Many pictures were taken of the tree cross sections to document types of damage due to fumigant injections.

For more details see Harrington and Thies (2007) as well as Thies and Nelson (1996).
Methodology_Citation:
Citation_Information:
Originator: Harrington, Constance A.
Originator: Thies, Walter G.
Publication_Date: 2007
Title:
Laminated root rot and fumigant injection affect survival and growth of Douglas-fir
Geospatial_Data_Presentation_Form: journal article
Series_Information:
Series_Name: Western Journal of Applied Forestry
Issue_Identification: 22(3): 220-227
Online_Linkage: https://doi.org/10.1093/wjaf/22.3.220
Methodology_Citation:
Citation_Information:
Originator: Thies, Walter G.
Originator: Nelson, Earl E.
Publication_Date: 1996
Title:
Reducing Phellinus weirii inoculum by applying fumigants to living Douglas-fir
Geospatial_Data_Presentation_Form: journal article
Series_Information:
Series_Name: Canadian Journal of Forest Research
Issue_Identification: 26(7): 1158-1165
Online_Linkage: https://doi.org/10.1139/x26-129
Source_Information:
Source_Citation:
Citation_Information:
Originator: National Centers for Environmental Information, National Oceanic and Atmospheric Administration (NOAA)
Publication_Date: 2005
Title:
VERNONIA NUMBER 2, OR US: monthly precipitation
Geospatial_Data_Presentation_Form: tabular digital data
Series_Information:
Series_Name: Climate Data Online
Issue_Identification: GHCND:USC00358884
Other_Citation_Details:
Downloaded file last updated on July 22, 2005
Online_Linkage: https://www.ncdc.noaa.gov/cdo-web/datasets/GHCND/stations/GHCND:USC00358884/detail
Type_of_Source_Media: Online
Source_Time_Period_of_Content:
Time_Period_Information:
Range_of_Dates/Times:
Beginning_Date: 1967
Ending_Date: 2005
Source_Currentness_Reference:
Ground Condition
Source_Citation_Abbreviation:
NOAA
Source_Contribution:
Monthly total precipitation from 1967-2005 for Veronia 2 NOAA weather station in Oregon was obtained for 1967-2005.
Process_Step:
Process_Description:
Monthly NOAA precipitation data were obtained to help provide insight into the data included in this data publication.
Source_Used_Citation_Abbreviation:
NOAA
Process_Date: 2005
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Entity_and_Attribute_Information:
Overview_Description:
Entity_and_Attribute_Overview:
Below you will find a list and description of the files available in this data publication.

NOTE: unless otherwise noted, a blank cell means not measured (or not applicable)

INFORMATIONAL FILES

\Data\RootRot_Codes.csv: Comma-delimited ASCII text file containing code descriptions for variables used in RootRot_Root_Data.csv and/or RootRot_Tree_Data.csv.
Variables include:
Code Name = name for code
Code Value = value for code
Description = complete description of the code value

\Data\RootRot_Root_Variables.csv: Comma-delimited ASCII text file containing variable descriptions for RootRot_Root_Data.csv.
Variables include:
Variable = name of variable
Description = description of variable
Units = variable units, if applicable
Code Name = name for code used to describe categorical values of the variable, if applicable

\Data\RootRot_Tree_Variables.csv: Comma-delimited ASCII text file containing variable descriptions for RootRot_Tree_Data.csv.
Variables include:
Variable = name of variable
Description = description of variable
Units = variable units, if applicable
Code Name = name for code used to describe categorical values of the variable, if applicable


DATA FILES

\Data\RootRot_Root_Data.csv: Comma-delimited ASCII text file containing information of individual roots showing signs of residual infection.
See \Data\RootRot_Root_Variables.csv for variable descriptions and \Data\RootRot_Codes.csv for code descriptions.

\Data\RootRot_Tree_Data.csv: Comma-delimited ASCII text file containing tree measurement data and Coniferiporia weirii root infection data from the Apiary Root Rot study. Data include, but are not limited to, tree height, diameter at breast height, annual growths, vigor ratings and root disease infection rates. See \Data\RootRot_Tree_Variables.csv for variable descriptions and \Data\RootRot_Codes.csv for code descriptions.


SUPPLEMENTAL FILES

\Supplements\Vernonia_Monthly_Precip.csv: Comma-delimited ASCII text file containing precipitation data from Vernonia, Oregon (Vernonia 2 NOAA weather station). Elevation: 630 feet, Latitude: 45.52 N, Longitude: 123.11 W (Apiary site: Elevation: 1,378 feet, Latitude: 46.01 N, Longitude: 123.04 W). NOTE: The first 15 rows contain header information and data begins on row 16.
Variables include:
Year = year (2-digit) of precipitation measured
Jan-Dec = total monthly precipitation in inches
Jan_Flag-Dec_Flag = flag for monthly measurement (a = 1 day missing, b = 2 days missing, c = 3 days, etc.; z = 26 or more days missing; A = Accumulations present)
Ann = total precipitation for the year in inches

\Supplements\PhotoScans\tree*.tif: Tagged Image Format files (23) containing images of cross sections with Coniferiporia weirii infection. The filename contains the tree tag number.
Entity_and_Attribute_Detail_Citation:
Harrington, Constance A.; Thies, Walter G. 2007. Laminated root rot and fumigant injection affect survival and growth of Douglas-fir. Western Journal of Applied Forestry 22(3): 220-227. https://doi.org/10.1093/wjaf/22.3.220

Thies, Walter G.; Nelson, Earl E. 1996. Reducing Phellinus weirii inoculum by applying fumigants to living Douglas-fir. Canadian Journal of Forest Research 26(7): 1158-1165. https://doi.org/10.1139/x26-129
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Distribution_Information:
Distributor:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization: USDA Forest Service, Research and Development
Contact_Position: Research Data Archivist
Contact_Address:
Address_Type: mailing and physical
Address: 240 West Prospect Road
City: Fort Collins
State_or_Province: CO
Postal_Code: 80526
Country: USA
Contact_Voice_Telephone: see Contact Instructions
Contact Instructions: This contact information was current as of August 2020. For current information see Contact Us page on: https://doi.org/10.2737/RDS.
Resource_Description: RDS-2020-0052
Distribution_Liability:
Metadata documents have been reviewed for accuracy and completeness. Unless otherwise stated, all data and related materials are considered to satisfy the quality standards relative to the purpose for which the data were collected. However, neither the author, the Archive, nor any part of the federal government can assure the reliability or suitability of these data for a particular purpose. The act of distribution shall not constitute any such warranty, and no responsibility is assumed for a user's application of these data or related materials.

The metadata, data, or related materials may be updated without notification. If a user believes errors are present in the metadata, data or related materials, please use the information in (1) Identification Information: Point of Contact, (2) Metadata Reference: Metadata Contact, or (3) Distribution Information: Distributor to notify the author or the Archive of the issues.
Standard_Order_Process:
Digital_Form:
Digital_Transfer_Information:
Format_Name: ASCII
Format_Version_Number: see Format Specification
Format_Specification:
Comma-delimited ASCII text file (CSV)
File_Decompression_Technique: Files zipped with 7-Zip 19.01
Digital_Transfer_Option:
Online_Option:
Computer_Contact_Information:
Network_Address:
Network_Resource_Name: https://doi.org/10.2737/RDS-2020-0052
Digital_Form:
Digital_Transfer_Information:
Format_Name: TIFF
Format_Version_Number: see Format Specification
Format_Specification:
Tagged Image File Format (TIF)
File_Decompression_Technique: Files zipped with 7-Zip 19.01
Digital_Transfer_Option:
Online_Option:
Computer_Contact_Information:
Network_Address:
Network_Resource_Name: https://doi.org/10.2737/RDS-2020-0052
Fees: None
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Metadata_Reference_Information:
Metadata_Date: 20200828
Metadata_Contact:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization: USDA Forest Service, Pacific Northwest Research Station
Contact_Person: Constance Harrington
Contact_Position: Research Forester
Contact_Address:
Address_Type: mailing and physical
Address: 3625 93rd Ave SW
City: Olympia
State_or_Province: WA
Postal_Code: 98512
Country: USA
Contact_Voice_Telephone: 360-753-7670
Metadata_Standard_Name: FGDC Biological Data Profile of the Content Standard for Digital Geospatial Metadata
Metadata_Standard_Version: FGDC-STD-001.1-1999
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