Maps of Puerto Rico and Virgin Islands forest functional groups, biomass, height, and species counts (2001-2008) and satellite image composites (1980-2000)

Metadata:

Identification_Information:
Citation:
Citation_Information:
Originator: Helmer, Eileen H.
Originator: Ruzycki, Thomas S.
Originator: Wilson, Barry T.
Originator: Sherrill, Kirk R.
Originator: Lefsky, Michael A.
Originator: Marcano-Vega, Humfredo
Originator: Brandeis, Thomas J.
Originator: Erickson, Heather E.
Originator: Reufenacht, Bonnie
Publication_Date: 2023
Title:
Maps of Puerto Rico and Virgin Islands forest functional groups, biomass, height, and species counts (2001-2008) and satellite image composites (1980-2000)
Geospatial_Data_Presentation_Form: raster and vector digital data
Publication_Information:
Publication_Place: Fort Collins, CO
Publisher: Forest Service Research Data Archive
Online_Linkage: https://doi.org/10.2737/RDS-2023-0045
Description:
Abstract:
This data publication contains 49 ERDAS IMAGINE (IMG) raster images representing modeled distributions using Cubist, PGNN or both, of native, endemic and introduced tree species counts, relative basal areas of functional groups, species basal areas, and forest biomass from forest inventory data, satellite imagery and environmental data for Puerto Rico and the Virgin Islands. Mapped outputs represent the years 2001-2008 (dates of inventory). Also included are raster data of generalized geology digitized from paper maps. Imagery include time series (1980-2000) of Landsat composites and SPOT panchromatic, and scene extents for the composites.
Purpose:
Until global wall-to-wall remote sensing data from more specialized sensors are available, maps from multispectral image time series and predictor data should help with running ecosystem models and as sustainable development indicators. Our purpose here is to paint a picture for the Caribbean islands of Puerto Rico and the Virgin Islands (PRVI), of the outcome for tropical forests of large-scale clearing and regrowth given variable climate, topography, soil substrates and disturbance history; of colonization by several exotic species; and of protected areas established at different times.

Towards that goal, we first assemble a database of tree species functional traits and other characteristics. Secondly, we apply two approaches to modeling and mapping several attributes of forests including: a) counts and relative basal areas of introduced, native and endemic tree species; b) relative basal areas of selected functional groups; c) forest structure and biomass; and d) individual tree species distributions. Helmer et al. (2018) briefly discusses the relative advantages of the two modeling methods. Our purpose was also to evaluate spatial patterns of disturbance history, protection, climate, geology and topography and address the implications of these and related results for Earth System Models (ESMs) and forest sustainability, specifically, forest-related aspects of United Nations Sustainable Development Goal (UN SDG) 15, particularly Target 15.2, Indicator 15.2.1: Progress towards sustainable forest management.
Supplemental_Information:
For more information about these data, see Helmer et al. (2018).

These data were published on 07/25/2023. On 11/13/2023 we removed "modeled" from the title to eliminate potential confusion that maps were simpled modeled data. Maps were generated using field data and remote sensing together with statistical models.
Time_Period_of_Content:
Time_Period_Information:
Range_of_Dates/Times:
Beginning_Date: 1980
Ending_Date: 2008
Currentness_Reference:
Ground condition
Status:
Progress: Complete
Maintenance_and_Update_Frequency: None planned
Spatial_Domain:
Description_of_Geographic_Extent:
The study area is a collection of Caribbean islands encompassing Puerto Rico, including Vieques, Culebra and Mona and the U.S. and British Virgin Islands. The climate is tropical, under the definition of tropical as having no frost at sea level. The tropical forest types range from young and old secondary forest to old forest, and from dry forests to humid forests including deciduous, semi-deciduous and evergreen forests including cloud forests. Soils include alluvial soils that are mostly in lowland areas, and soils formed over limestone, volcanic, and serpentine substrates. Most limestone areas have complex karst topography. For a given climate, forests formed on limestone and serpentine substrates have leaf types or growth forms leaning toward those of drier forests, given fast-draining soils. Serpentine (ultramafic) substrates not only have fast-draining soils, but they are also nutrient poor and have toxic levels of some metals.
Bounding_Coordinates:
West_Bounding_Coordinate: -68.05747
East_Bounding_Coordinate: -64.20806
North_Bounding_Coordinate: 18.99021
South_Bounding_Coordinate: 17.57938
Bounding_Altitudes:
Altitude_Minimum: 0
Altitude_Maximum: 1338
Altitude_Distance_Units: meters
Keywords:
Theme:
Theme_Keyword_Thesaurus: ISO 19115 Topic Category
Theme_Keyword: biota
Theme_Keyword: environment
Theme_Keyword: imageryBaseMapsEarthCover
Theme_Keyword: planningCadastre
Theme_Keyword: climatologyMeteorologyAtmosphere
Theme:
Theme_Keyword_Thesaurus: National Research & Development Taxonomy
Theme_Keyword: Climate change
Theme_Keyword: Ecology, Ecosystems, & Environment
Theme_Keyword: Landscape ecology
Theme_Keyword: Forest Products
Theme_Keyword: Bioenergy and biomass
Theme_Keyword: Inventory, Monitoring, & Analysis
Theme_Keyword: Resource inventory
Theme_Keyword: Natural Resource Management & Use
Theme_Keyword: Landscape management
Theme_Keyword: Timber
Theme_Keyword: Wilderness
Theme:
Theme_Keyword_Thesaurus: None
Theme_Keyword: decidousness
Theme_Keyword: protected areas
Theme_Keyword: leaf thickness
Theme_Keyword: sclerophylly
Theme_Keyword: forest recovery
Theme_Keyword: biophysical controls
Theme_Keyword: socioeconomic controls
Theme_Keyword: sustainable development goals
Theme_Keyword: tree species richness
Theme_Keyword: Earth System Model
Theme_Keyword: cloud forest
Theme_Keyword: mountain habitats
Theme_Keyword: species distribution model
Theme_Keyword: leaf toughness
Theme_Keyword: lithology
Theme_Keyword: global change
Place:
Place_Keyword_Thesaurus: None
Place_Keyword: Puerto Rico
Place_Keyword: Culebra
Place_Keyword: Vieques
Place_Keyword: Mona
Place_Keyword: U.S. Virgin Islands
Place_Keyword: St. John
Place_Keyword: St. Thomas
Place_Keyword: St. Croix
Place_Keyword: Tortolla
Place_Keyword: Virgin Gorda
Place_Keyword: Anegada
Place_Keyword: Jost van Dyke
Place_Keyword: British Virgin Islands
Place_Keyword: Caribbean
Place_Keyword: Greater Antilles
Taxonomy:
Keywords/Taxon:
Taxonomic_Keyword_Thesaurus:
None
Taxonomic_Keywords: multiple species
Taxonomic_Keywords: plants
Taxonomic_Keywords: vegetation
Taxonomic_System:
Classification_System/Authority:
Classification_System_Citation:
Citation_Information:
Originator: ITIS
Publication_Date: 2022
Title:
Integrated Taxonomic Information System
Geospatial_Data_Presentation_Form: on-line database
Other_Citation_Details:
Retrieved [October, 3, 2022]; CC0
Online_Linkage: https://www.itis.gov
Online_Linkage: https://doi.org/10.5066/F7KH0KBK
Classification_System_Modifications:
ITIS recommends the accepted name "Vachellia farnesiana var. farnesiana", instead of "Acacia farnesiana"
ITIS recommends the accepted name "Citrus X sinensis", instead of "Citrus sinensis"
Taxonomic_Procedures:
Taxonomic_Classification:
Taxon_Rank_Name: Kingdom
Taxon_Rank_Value: Plantae
Applicable_Common_Name: plantes
Applicable_Common_Name: Planta
Applicable_Common_Name: Vegetal
Applicable_Common_Name: plants
Taxonomic_Classification:
Taxon_Rank_Name: Subkingdom
Taxon_Rank_Value: Viridiplantae
Applicable_Common_Name: green plants
Taxonomic_Classification:
Taxon_Rank_Name: Infrakingdom
Taxon_Rank_Value: Streptophyta
Applicable_Common_Name: land plants
Taxonomic_Classification:
Taxon_Rank_Name: Superdivision
Taxon_Rank_Value: Embryophyta
Taxonomic_Classification:
Taxon_Rank_Name: Division
Taxon_Rank_Value: Tracheophyta
Applicable_Common_Name: vascular plants
Applicable_Common_Name: tracheophytes
Taxonomic_Classification:
Taxon_Rank_Name: Subdivision
Taxon_Rank_Value: Spermatophytina
Applicable_Common_Name: spermatophytes
Applicable_Common_Name: seed plants
Applicable_Common_Name: phanérogames
Taxonomic_Classification:
Taxon_Rank_Name: Class
Taxon_Rank_Value: Magnoliopsida
Taxonomic_Classification:
Taxon_Rank_Name: Superorder
Taxon_Rank_Value: Asteranae
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Lamiales
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Bignoniaceae
Applicable_Common_Name: bignonias
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Spathodea
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Spathodea campanulata
Applicable_Common_Name: fireball
Applicable_Common_Name: fountain tree
Applicable_Common_Name: rarningobchey
Applicable_Common_Name: tulipier du Gabon
Applicable_Common_Name: African tuliptree
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Boraginales
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Cordiaceae
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Cordia
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Cordia alliodora
Applicable_Common_Name: cypre
Applicable_Common_Name: Spanish elm
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Ehretiaceae
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Bourreria
Applicable_Common_Name: strongback
Applicable_Common_Name: strongbark
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Bourreria succulenta
Applicable_Common_Name: pigeon berry
Applicable_Common_Name: bodywood
Taxonomic_Classification:
Taxon_Rank_Name: Superorder
Taxon_Rank_Value: Caryophyllanae
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Caryophyllales
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Nyctaginaceae
Applicable_Common_Name: four o'clocks
Applicable_Common_Name: nyctaginacées
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Guapira
Applicable_Common_Name: blolly
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Guapira fragrans
Applicable_Common_Name: black mampoo
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Polygonaceae
Applicable_Common_Name: knotweed
Applicable_Common_Name: renouées
Applicable_Common_Name: buckwheat
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Coccoloba
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Coccoloba diversifolia
Applicable_Common_Name: tietongue
Applicable_Common_Name: pigeon plum
Taxonomic_Classification:
Taxon_Rank_Name: Superorder
Taxon_Rank_Value: Lilianae
Applicable_Common_Name: monocots
Applicable_Common_Name: monocotyledons
Applicable_Common_Name: monocotylédones
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Arecales
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Arecaceae
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Prestoea
Applicable_Common_Name: prestoea
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Prestoea acuminata
Applicable_Common_Name: Sierran palm
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Roystonea
Applicable_Common_Name: royal palm
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Roystonea borinquena
Applicable_Common_Name: Puerto Rico royal palm
Taxonomic_Classification:
Taxon_Rank_Name: Superorder
Taxon_Rank_Value: Magnolianae
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Laurales
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Lauraceae
Applicable_Common_Name: laurels
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Ocotea
Applicable_Common_Name: sweetwood
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Ocotea leucoxylon
Applicable_Common_Name: loblolly sweetwood
Taxonomic_Classification:
Taxon_Rank_Name: Superorder
Taxon_Rank_Value: Rosanae
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Rosales
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Urticaceae
Applicable_Common_Name: nettles
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Cecropia
Applicable_Common_Name: pumpwood
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Cecropia schreberiana
Applicable_Common_Name: pumpwood
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Sapindales
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Sapindaceae
Applicable_Common_Name: soapberries
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Melicoccus
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Melicoccus bijugatus
Applicable_Common_Name: Spanish lime
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Burseraceae
Applicable_Common_Name: burseras
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Bursera
Applicable_Common_Name: bursera
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Bursera simaruba
Applicable_Common_Name: West Indian birch
Applicable_Common_Name: gumbo limbo
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Rutaceae
Applicable_Common_Name: rues
Applicable_Common_Name: rutacées
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Citrus
Applicable_Common_Name: citrus
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Citrus X sinensis
Applicable_Common_Name: sweet orange
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Meliaceae
Applicable_Common_Name: mahogany
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Guarea
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Guarea guidonia
Applicable_Common_Name: American muskwood
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Fabales
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Fabaceae
Applicable_Common_Name: peas
Applicable_Common_Name: legumes
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Vachellia
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Vachellia farnesiana
Applicable_Common_Name: sweet acacia
Taxonomic_Classification:
Taxon_Rank_Name: Variety
Taxon_Rank_Value: Vachellia farnesiana var. farnesiana
Applicable_Common_Name: sweet acacia
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Inga
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Inga laurina
Applicable_Common_Name: sacky sac bean
Access_Constraints: None
Use_Constraints:
These data were collected using funding from the U.S. Government and can be used without additional permissions or fees. If you use these data in a publication, presentation, or other research product please use the following citation:

Helmer, Eileen H.; Ruzycki, Thomas S.; Wilson, Barry T.; Sherrill, Kirk R.; Lefsky, Michael A.; Marcano-Vega, Humfredo; Brandeis, Thomas J.; Erickson, Heather E.; Reufenacht, Bonnie. 2023. Maps of Puerto Rico and Virgin Islands forest functional groups, biomass, height, and species counts (2001-2008) and satellite image composites (1980-2000). Fort Collins, CO: Forest Service Research Data Archive. https://doi.org/10.2737/RDS-2023-0045
Point_of_Contact:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization: USDA Forest Service, International Institute of Tropical Forestry
Contact_Person: Eileen H. Helmer
Contact_Position: Principal Investigator
Contact_Address:
Address_Type: mailing and physical
Address: 240 West Prospect Road
City: Fort Collins
State_or_Province: CO
Postal_Code: 80526
Country: USA
Contact_Voice_Telephone: 970-498-2644
Contact_Facsimile_Telephone: 970-498-1212
Contact_Electronic_Mail_Address: eileen.helmer@usda.gov
Hours_of_Service: M-F 8-5 MT
Contact Instructions: Phone or email
Contact Instructions: This contact information was current as of original publication date. For current information see Contact Us page on: https://doi.org/10.2737/RDS.
Data_Set_Credit:
This research was funded by the USDA Forest Service including the Forest Inventory and Analysis programs of the Southern Research Station and Northern Research Station, the International Institute of Tropical Forestry (IITF) and the Geospatial Technology and Applications Center, and through Cooperative Agreements with Colorado State University (10-CA-11120101-002, 04-CA-11120101-047, and 07-CA-11120101-019).


Author Information:

Eileen H. Helmer
USDA Forest Service, International Institute of Tropical Forestry
https://orcid.org/0000-0003-3731-0056

Thomas S. Ruzycki
Colorado State University, Center for Environmental Management of Military Lands
https://orcid.org/0000-0002-4654-7808

Barry T. Wilson
USDA Forest Service, Northern Research Station
https://orcid.org/0000-0002-1940-7682

Kirk R. Sherrill
U.S. National Park Service, Inventory and Monitoring Network
https://orcid.org/0000-0001-5953-2990

Michael A. Lefsky
Colorado State University, Ecosystem Science and Sustainability
https://orcid.org/0000-0001-5952-1378

Humfredo Marcano-Vega
USDA Forest Service, Southern Research Station
https://orcid.org/0000-0001-7642-9151

Thomas J. Brandeis
USDA Forest Service, Southern Research Station

Heather E. Erickson
Consulting Research Ecology
https://orcid.org/0000-0002-3456-6059

Bonnie Reufenacht
Red Castle Resources
Native_Data_Set_Environment:
Microsoft Windows 10 Enterprise Version 21H1 (Build 19043.1466) Windows Feature Experience Pack 120.2212.3920.0
Esri ArcCatalog 10.6.1.9270
Cross_Reference:
Citation_Information:
Originator: Helmer, Eileen H.
Originator: Ruzycki, Thomas S.
Originator: Wilson, Barry T.
Originator: Sherrill, Kirk R.
Originator: Lefsky, Michael A.
Originator: Marcano-Vega, Humfredo
Originator: Brandeis, Thomas J.
Originator: Erickson, Heather E.
Originator: Ruefenacht, Bonnie
Publication_Date: 2018
Title:
Tropical deforestation and recolonization by exotic and native trees: Spatial patterns of tropical forest biomass, functional groups, and species counts and links to stand age, geoclimate, and sustainability goals
Geospatial_Data_Presentation_Form: journal article
Series_Information:
Series_Name: Remote Sensing
Issue_Identification: 10(11): 1724
Online_Linkage: https://doi.org/10.3390/rs10111724
Online_Linkage: https://www.fs.usda.gov/research/treesearch/57626
Cross_Reference:
Citation_Information:
Originator: Kennaway, Todd A
Originator: Helmer, Eileen H.
Publication_Date: 2007
Title:
The forest types and ages cleared for land development in Puerto Rico
Geospatial_Data_Presentation_Form: journal article
Series_Information:
Series_Name: GIScience and Remote Sensing
Issue_Identification: 44(4): 356-382
Online_Linkage: https://doi.org/10.2747/1548-1603.44.4.356
Online_Linkage: https://www.fs.usda.gov/research/treesearch/30000
Cross_Reference:
Citation_Information:
Originator: Kennaway, Todd A.
Originator: Helmer, Eileen H.
Originator: Lefsky, Michael A.
Originator: Brandeis, Thomas J.
Originator: Sherill, Kirk R.
Publication_Date: 2008
Title:
Mapping land cover and estimating forest structure using satellite imagery and coarse resolution lidar in the Virgin Islands
Geospatial_Data_Presentation_Form: journal article
Series_Information:
Series_Name: Journal of Applied Remote Sensing
Issue_Identification: 2(1): 023551
Online_Linkage: https://doi.org/10.1117/1.3063939
Online_Linkage: https://www.fs.usda.gov/research/treesearch/35371
Analytical_Tool:
Analytical_Tool_Description:
Decision tree software Cubist
Tool_Access_Information:
Online_Linkage: https://www.rulequest.com
Tool_Access_Instructions:
see website
Back to Top
Data_Quality_Information:
Attribute_Accuracy:
Attribute_Accuracy_Report:
Please see \Supplements\ForestCharacteristics_CorrCoeff_AvgAbsError.pdf for correlation coefficients and average absolute error information for the Cubist and PGNN models.

Data from the U.S. Geological Survey and European Space Agency follow their respective policies and procedures to ensure the accuracy of their datasets.

Georeferencing for Landsat images was done by U.S. Geological Survey. Georeferencing for SPOT was done by the SPOT Image Corporation. No formal evaluation was performed for the accuracy of spatial mosaicking. Cloud removal was done with manual editing and through the use of algorithms as described in Helmer et al. (2012).

Helmer, Eileen H.; Ruzycki, Thomas S.; Benner, Jay; Voggesser, Shannon M.; Scobie, Barbara P.; Park, Courtenay; Fanning, David W.; Ramnarine, Seepersad. 2012. Detailed maps of tropical forest types are within reach: forest tree communities for Trinidad and Tobago mapped with multiseason Landsat and multiseason fine-resolution imagery. Forest Ecology and Management. 279: 147-166. https://doi.org/10.1016/j.foreco.2012.05.016 and https://www.fs.usda.gov/research/treesearch/41313
Logical_Consistency_Report:
The data are logically consistent. The consistency was verified as part of the quality assurance that occurred during data analysis.
Completeness_Report:
These data and their counterparts are fully attributed and no additional updates or alterations will be needed for the present datum and spheroid.

In general, we excluded maps that had a correlation coefficient of less than 0.25. Species maps derived from the PGNN model had better correlation coefficients than those from the Cubist model, so those from the Cubist model were omitted. The only exception to this is the map for Spathodea campanulata derived from Cubist due to its higher correlation coefficient. Maps of forest characteristics derived from the Cubist model had better correlation coefficients than those produced from the PGNN model, so those from the PGNN model were omitted.
Lineage:
Source_Information:
Source_Citation:
Citation_Information:
Originator: Burrill, Elizabeth A.
Originator: Wilson, Andrea M.
Originator: Turner, Jeffery A.
Originator: Pugh, Scott A.
Originator: Menlove, James
Originator: Christiansen, Glenn
Originator: Conkling, Barbara L.
Originator: David, Winnie
Publication_Date: 2018
Title:
The Forest Inventory and Analysis Database: Database Description and User Guide for Phase 2
Edition: version 8.0
Geospatial_Data_Presentation_Form: document
Publication_Information:
Publisher: U.S. Department of Agriculture, Forest Service
Other_Citation_Details:
946 pages
Online_Linkage: https://www.fia.fs.usda.gov/library/database-documentation/index.php
Online_Linkage: https://www.fia.fs.usda.gov/library/database-documentation/current/ver80/FIADB%20User%20Guide%20P2_8-0.pdf
Type_of_Source_Media: Online
Source_Time_Period_of_Content:
Time_Period_Information:
Single_Date/Time:
Calendar_Date: 2018
Source_Currentness_Reference:
Publication Date
Source_Citation_Abbreviation:
Burrill et al. (2018)
Source_Contribution:
Model Input: Forest Inventory and Analysis plot data.

USDA Forest Service. 2019. Forest Inventory and Analysis database. St. Paul, MN: USDA Forest Service, Northern Research Station. https://doi.org/10.2737/RDS-2001-FIADB
Source_Information:
Source_Citation:
Citation_Information:
Originator: Daly, Christopher
Originator: Helmer, Eileen H.
Originator: Quinones, Maya
Publication_Date: 2003
Title:
Mapping the climate of Puerto Rico, Vieques and Culebra
Geospatial_Data_Presentation_Form: journal article
Series_Information:
Series_Name: International Journal of Climatology
Issue_Identification: 23: 1359-1381
Online_Linkage: https://doi.org/10.1002/joc.937
Online_Linkage: https://www.fs.usda.gov/research/treesearch/30164
Type_of_Source_Media: Online
Source_Time_Period_of_Content:
Time_Period_Information:
Single_Date/Time:
Calendar_Date: 2003
Source_Currentness_Reference:
Ground Condition
Source_Citation_Abbreviation:
Daly et al. (2003)
Source_Contribution:
Model Input: Precipitation – monthly and annual totals, minimums, maximums; dry and wet season totals; mean + coefficients of Fourier-transformed monthly (see Helmer et al. 2018).
Model Input: Temperature – monthly and annual averages, minimums, maximums; dry and wet season averages; mean + coefficients of Fourier-transformed monthly (see Helmer et al. 2018).
Source_Information:
Source_Citation:
Citation_Information:
Originator: European Space Agency
Publication_Date: 1995
Title:
Satellite Pour l’Observation de la Terre (SPOT) imagery
Geospatial_Data_Presentation_Form: raster digital data
Publication_Information:
Publication_Place: Paris, France
Publisher: European Space Agency
Online_Linkage: https://earth.esa.int/eogateway/missions/spot
Type_of_Source_Media: Online
Source_Time_Period_of_Content:
Time_Period_Information:
Single_Date/Time:
Calendar_Date: 1995
Source_Currentness_Reference:
Ground Condition
Source_Citation_Abbreviation:
ESA (1995)
Source_Contribution:
Model Input: SPOT panchromatic image composite for the year 1995.
Source_Information:
Source_Citation:
Citation_Information:
Originator: Farr, Tom G.
Originator: Kobrick, Mike
Publication_Date: 2000
Title:
Shuttle radar topography mission produces a wealth of data
Geospatial_Data_Presentation_Form: journal article
Series_Information:
Series_Name: Eos Transactions of the American Geophysical Union
Issue_Identification: 81(48): 583-585
Online_Linkage: https://doi.org/10.1029/EO081i048p00583
Type_of_Source_Media: Online
Source_Time_Period_of_Content:
Time_Period_Information:
Single_Date/Time:
Calendar_Date: 2000
Source_Currentness_Reference:
Ground Condition
Source_Citation_Abbreviation:
Farr and Kobrick (2000)
Source_Contribution:
Model Input: Elevation and slope position.
Source_Information:
Source_Citation:
Citation_Information:
Originator: Garrison, Louis E.
Originator: Martin, Ray G.
Originator: Berryhill, Henry L., Jr.
Originator: Buell, Miner W., Jr.
Originator: Ensminger, Henry R.
Originator: Perry, Robert K.
Publication_Date: 1972
Title:
Preliminary Tectonic Map of the Eastern Greater Antilles Region
Geospatial_Data_Presentation_Form: map
Publication_Information:
Publication_Place: Washington D.C.
Publisher: United States Geological Survey
Online_Linkage: https://doi.org/10.3133/i732
Type_of_Source_Media: Online
Source_Time_Period_of_Content:
Time_Period_Information:
Single_Date/Time:
Calendar_Date: 1972
Source_Currentness_Reference:
Ground Condition
Source_Citation_Abbreviation:
Garrison et al. (1972)
Source_Contribution:
Model Input: Geological Substrate for the British and U.S. Virgin Islands.
Source_Information:
Source_Citation:
Citation_Information:
Originator: Helmer, Eileen H.
Originator: Ruefenacht, Bonnie
Publication_Date: 2007
Title:
A comparison of radiometric normalization methods when filling cloud gaps in Landsat imagery
Geospatial_Data_Presentation_Form: journal article
Series_Information:
Series_Name: Canadian Journal of Remote Sensing
Issue_Identification: 33(4): 325-340
Online_Linkage: https://doi.org/10.5589/m07-028
Type_of_Source_Media: Online
Source_Time_Period_of_Content:
Time_Period_Information:
Single_Date/Time:
Calendar_Date: 2000
Source_Currentness_Reference:
Publication Date
Source_Citation_Abbreviation:
Helmer and Ruefenacht (2007)
Source_Contribution:
The method used to develop the cloud-free satellite imagery for multiple seasons are described in this source. The satellite image composites for Puerto Rico and the Virgin Islands were created using this method.
Source_Information:
Source_Citation:
Citation_Information:
Originator: Helmer, Eileen H.
Originator: Ruzycki, Thomas S.
Originator: Wilson, Barry T.
Originator: Sherrill, Kirk R.
Originator: Lefsky, Micahel A.
Originator: Marcano-Vega, Humfredo
Originator: Brandeis, Thomas J.
Originator: Erickson, Heather E.
Originator: Reufenacht, Bonnie
Publication_Date: 2018
Title:
Tropical deforestation and recolonization by exotic and native trees: Spatial patterns of tropical forest biomass, functional groups and species counts and links to stand age, geoclimate and sustainability goals
Geospatial_Data_Presentation_Form: journal article
Series_Information:
Series_Name: Remote Sensing
Issue_Identification: 10(11): 1724
Online_Linkage: https://doi.org/10.3390/rs10111724
Online_Linkage: https://www.fs.usda.gov/research/treesearch/57626
Type_of_Source_Media: Online
Source_Time_Period_of_Content:
Time_Period_Information:
Single_Date/Time:
Calendar_Date: 2018
Source_Currentness_Reference:
Ground Condition
Source_Citation_Abbreviation:
Helmer et al. (2018)
Source_Contribution:
Model Input: Predictor data zones – discrete variable identifying islands.
Model Input: Land cover in 2000 for Mona Island.
Model Input: Distance to nearest secondary, tertiary and all roads and to the coast.
Model Input: Lidar-derived topography – elevation and slope position (Puerto Rico, St. John and St. Thomas; other areas filled in with above topographic data).
Source_Information:
Source_Citation:
Citation_Information:
Originator: Helmer, Eileen H.
Originator: Kay, Shannon L.
Originator: Marcano-Vega, Humfredo
Originator: Powers, Jennifer S.
Originator: Wood, Tana E.
Originator: Zhu, Xiaolin
Originator: Gwenzi, David
Originator: Ruzycki, Thomas S.
Publication_Date: 2023
Title:
Forest age map, tree species traits and Landsat phenology metrics for Puerto Rico and the U.S. Virgin Islands
Geospatial_Data_Presentation_Form: tabular and raster digital data
Publication_Information:
Publication_Place: Fort Collins, CO
Publisher: Forest Service Research Data Archive
Online_Linkage: https://doi.org/10.2737/RDS-2023-0004
Type_of_Source_Media: Online
Source_Time_Period_of_Content:
Time_Period_Information:
Range_of_Dates/Times:
Beginning_Date: 1936
Ending_Date: 2019
Source_Currentness_Reference:
Ground Condition
Source_Citation_Abbreviation:
Helmer et al. (2023)
Source_Contribution:
Species traits (functional groups) from flora and expert knowledge to map the basal areas or relative basal areas of native, introduced or endemic species and functional groups of leaf thickness, putative nitrogen-fixing status and deciduousness.
Source_Information:
Source_Citation:
Citation_Information:
Originator: Homer, Colin G.
Originator: Huang, Chengquan
Originator: Yang, Limin
Originator: Wylie, Bruce K.
Originator: Coan, Michael
Publication_Date: 2004
Title:
Development of a 2001 national land-cover database for the United States
Geospatial_Data_Presentation_Form: raster digital data
Series_Information:
Series_Name: Photogrammetric Engineering and Remote Sensing
Issue_Identification: 70(7): 829-840
Online_Linkage: https://www.mrlc.gov/data/legends/national-land-cover-database-2001-nlcd2001-legend
Online_Linkage: https://doi.org/10.14358/PERS.70.7.829
Online_Linkage: https://pubs.er.usgs.gov/publication/70156530
Type_of_Source_Media: Online
Source_Time_Period_of_Content:
Time_Period_Information:
Single_Date/Time:
Calendar_Date: 2001
Source_Currentness_Reference:
Ground Condition
Source_Citation_Abbreviation:
Homer et al. (2004)
Source_Contribution:
Model Input: Pixel-level percent tree canopy and impervious surface cover.
Source_Information:
Source_Citation:
Citation_Information:
Originator: Huete, Alfredo
Originator: Justice, Chris
Originator: Van Leeuwen, Wim
Publication_Date: 1999
Title:
MODIS vegetation index (MOD 13)
Geospatial_Data_Presentation_Form: document
Publication_Information:
Publication_Place: Greenbelt, MD
Publisher: National Aeronautics and Space Administration, Goddard Space Flight Center
Other_Citation_Details:
Algorithm theoretical basis document (Version 3)
Online_Linkage: https://modis.gsfc.nasa.gov/data/dataprod/mod13.php
Type_of_Source_Media: Online
Source_Time_Period_of_Content:
Time_Period_Information:
Single_Date/Time:
Calendar_Date: 1999
Source_Currentness_Reference:
Ground Condition
Source_Citation_Abbreviation:
Huete et al. (1999)
Source_Contribution:
Model Input: MODIS – Mean + coefficients of Fourier-transformed 16-day EVI composites4 (see Helmer et al. 2018).
Source_Information:
Source_Citation:
Citation_Information:
Originator: Kennaway, Todd A.
Originator: Helmer, Eileen H.
Publication_Date: 2007
Title:
The forest types and ages cleared for land development in Puerto Rico
Geospatial_Data_Presentation_Form: journal article
Series_Information:
Series_Name: GIScience and Remote Sensing
Issue_Identification: 44(4): 356-382
Online_Linkage: https://doi.org/10.2747/1548-1603.44.4.356
Online_Linkage: https://www.fs.usda.gov/research/treesearch/30000
Type_of_Source_Media: Online
Source_Time_Period_of_Content:
Time_Period_Information:
Multiple_Dates/Times:
Single_Date/Time:
Calendar_Date: 1978
Single_Date/Time:
Calendar_Date: 2000
Source_Currentness_Reference:
Ground Condition
Source_Citation_Abbreviation:
Kennaway and Helmer (2007)
Source_Contribution:
Model Input: Land cover in 1978 for mainland Puerto Rico only.
Model Input: Land cover in 2000 for entire study area.
Source_Information:
Source_Citation:
Citation_Information:
Originator: Kennaway, Todd A.
Originator: Helmer, Eileen H.
Originator: Lefsky, Micahel A.
Originator: Brandeis, Tom J.
Originator: Sherrill, Kirk R.
Publication_Date: 2008
Title:
Mapping land cover and estimating forest structure using satellite imagery and coarse resolution lidar in the Virgin Islands
Geospatial_Data_Presentation_Form: journal article
Series_Information:
Series_Name: Journal of Applied Remote Sensing
Issue_Identification: 2(1): 023551
Online_Linkage: https://doi.org/10.1117/1.3063939
Online_Linkage: https://www.fs.usda.gov/research/treesearch/35371
Type_of_Source_Media: Online
Source_Time_Period_of_Content:
Time_Period_Information:
Single_Date/Time:
Calendar_Date: 2000
Source_Currentness_Reference:
Ground Condition
Source_Citation_Abbreviation:
Kennaway et al. (2008)
Source_Contribution:
Model Input: Land cover in 2000 for entire study area.
Model Input: Forest mask from Year 2000 land cover, and forest cover proportion in surrounding 3x3, 9x9, 17x17 and 35x35-m windows.
Source_Information:
Source_Citation:
Citation_Information:
Originator: Kennaway, Todd A.
Originator: Helmer, Eileen H.
Originator: Lefsky, Michael A.
Originator: Brandeis, Tom J.
Originator: Sherrill, Kirk R.
Publication_Date: 2021
Title:
Virgin Islands land cover and forest structure
Geospatial_Data_Presentation_Form: raster digital data
Publication_Information:
Publication_Place: Fort Collins, CO
Publisher: Forest Service Research Data Archive
Online_Linkage: https://doi.org/10.2737/RDS-2021-0091
Type_of_Source_Media: Online
Source_Time_Period_of_Content:
Time_Period_Information:
Single_Date/Time:
Calendar_Date: 2000
Source_Currentness_Reference:
Ground Condition
Source_Citation_Abbreviation:
Kennaway et al. (2021)
Source_Contribution:
Model Input: Land cover in 2000 for the U.S. Virgin Islands and British Virgin Islands.
Source_Information:
Source_Citation:
Citation_Information:
Originator: Krushensky, Richard D.
Publication_Date: 1995
Title:
Generalized Geology Map of Puerto Rico
Geospatial_Data_Presentation_Form: map
Publication_Information:
Publication_Place: San Juan, Puerto
Publisher: United States Geological Survey, Caribbean Division
Type_of_Source_Media: Paper
Source_Time_Period_of_Content:
Time_Period_Information:
Single_Date/Time:
Calendar_Date: 1995
Source_Currentness_Reference:
Ground Condition
Source_Citation_Abbreviation:
Krushensky (1995)
Source_Contribution:
Model Input: Geological Substrate for Puerto Rico.
Source_Information:
Source_Citation:
Citation_Information:
Originator: Soil Survey staff
Publication_Date: 2016
Title:
The Gridded Soil Survey Geographic (gSSURGO) Database
Geospatial_Data_Presentation_Form: vector digital data
Publication_Information:
Publication_Place: Washington D.C.
Publisher: USDA Natural Resources Conservation Service
Online_Linkage: https://gdg.sc.egov.usda.gov/
Online_Linkage: https://websoilsurvey.sc.egov.usda.gov/App/HomePage.htm
Type_of_Source_Media: Online
Source_Time_Period_of_Content:
Time_Period_Information:
Single_Date/Time:
Calendar_Date: 2016
Source_Currentness_Reference:
Ground Condition
Source_Citation_Abbreviation:
NRCS (2016)
Source_Contribution:
Model Input: Soil orders for Puerto Rico and the U.S. Virgin Islands.
Source_Information:
Source_Citation:
Citation_Information:
Originator: Slater, James A.
Originator: Garvey, Graham
Originator: Johnston, Carolyn
Originator: Haase, Jeffrey
Originator: Heady, Barry
Originator: Kroenung, George
Originator: Little, James
Publication_Date: 2006
Title:
The srtm data “finishing” process and products
Geospatial_Data_Presentation_Form: journal article
Series_Information:
Series_Name: Photogrammetric Engineering and Remote Sensing
Issue_Identification: 72(3): 237-247
Online_Linkage: https://doi.org/10.14358/PERS.72.3.237
Online_Linkage: https://www2.jpl.nasa.gov/srtm
Type_of_Source_Media: Online
Source_Time_Period_of_Content:
Time_Period_Information:
Single_Date/Time:
Calendar_Date: 2006
Source_Currentness_Reference:
Ground Condition
Source_Citation_Abbreviation:
Slater et al. (2006)
Source_Contribution:
Model Input: Topography - elevation, aspect, percent slope, moisture index and topographic shadow for the base scene date of each Landsat composite.
Source_Information:
Source_Citation:
Citation_Information:
Originator: U.S. Geological Survey
Publication_Date: 2022
Title:
Landsat 1-5 Multispectral Scanner imagery
Geospatial_Data_Presentation_Form: raster digital data
Publication_Information:
Publication_Place: Sioux Falls, SD
Publisher: United States Geological Survey, Earth Resources Observation and Science Center
Online_Linkage: https://earthexplorer.usgs.gov/
Online_Linkage: https://doi.org/10.5066/F7H994GQ
Type_of_Source_Media: Online
Source_Time_Period_of_Content:
Time_Period_Information:
Multiple_Dates/Times:
Single_Date/Time:
Calendar_Date: 1980
Single_Date/Time:
Calendar_Date: 1985
Source_Currentness_Reference:
Ground Condition
Source_Citation_Abbreviation:
USGS Landsat MSS
Source_Contribution:
Model Input: Landsat MSS – Multispectral bands of cloud-minimized image composites centered on two epochs: the years 1980 and 1985 (see Helmer et al. 2018).
Source_Information:
Source_Citation:
Citation_Information:
Originator: U.S. Geological Survey
Publication_Date: 2022
Title:
Landsat 4-5 Thematic Mapper imagery
Geospatial_Data_Presentation_Form: raster digital data
Publication_Information:
Publication_Place: Sioux Falls, SD
Publisher: United States Geological Survey, Earth Resources Observation and Science Center
Online_Linkage: https://earthexplorer.usgs.gov/
Online_Linkage: https://doi.org/10.5066/F7N015TQ
Type_of_Source_Media: Online
Source_Time_Period_of_Content:
Time_Period_Information:
Single_Date/Time:
Calendar_Date: 1991
Source_Currentness_Reference:
Ground Condition
Source_Citation_Abbreviation:
USGS Landsat TM
Source_Contribution:
Model Input: Landsat TM - Multispectral optical bands of cloud-minimized image composites centered on 1991 (see Helmer et al. 2018).
Source_Information:
Source_Citation:
Citation_Information:
Originator: U.S. Geological Survey
Publication_Date: 2022
Title:
Landsat 7 Enhanced Thematic Mapper Plus imagery
Geospatial_Data_Presentation_Form: raster digital data
Publication_Information:
Publication_Place: Sioux Falls, SD
Publisher: United States Geological Survey, Earth Resources Observation and Science Center
Online_Linkage: https://earthexplorer.usgs.gov/
Online_Linkage: https://doi.org/10.5066/F7WH2P8G
Type_of_Source_Media: Online
Source_Time_Period_of_Content:
Time_Period_Information:
Single_Date/Time:
Calendar_Date: 2000
Source_Currentness_Reference:
Ground Condition
Source_Citation_Abbreviation:
USGS Landsat ETM+
Source_Contribution:
Model Input: Landsat ETM+ - Multispectral optical bands of cloud-minimized image composites centered on 2000 (see Helmer et al. 2018).
Source_Information:
Source_Citation:
Citation_Information:
Originator: Wilson, Barry T.
Originator: Lister, Andrew J.
Originator: Riemann, Rachel I.
Publication_Date: 2012
Title:
A nearest-neighbor imputation approach to mapping tree species over large areas using forest inventory plots and moderate resolution raster data
Geospatial_Data_Presentation_Form: journal article
Series_Information:
Series_Name: Forest Ecology and Management
Issue_Identification: 271: 182-198
Online_Linkage: https://doi.org/10.1016/j.foreco.2012.02.002
Online_Linkage: https://www.fs.usda.gov/research/treesearch/40312
Type_of_Source_Media: Online
Source_Time_Period_of_Content:
Time_Period_Information:
Single_Date/Time:
Calendar_Date: 2012
Source_Currentness_Reference:
Publication Date
Source_Citation_Abbreviation:
Wilson et al. (2012)
Source_Contribution:
The methods from this source were used to obtain phenology metrics from MODIS imagery.
Source_Information:
Source_Citation:
Citation_Information:
Originator: Wilson, Barry T.
Originator: Woodall, Christopher W.
Originator: Griffith, Douglas M.
Publication_Date: 2013
Title:
Imputing forest carbon stock estimates from inventory plots to a nationally continuous coverage
Geospatial_Data_Presentation_Form: journal article
Series_Information:
Series_Name: Carbon Balance and Management
Issue_Identification: 8: 1
Online_Linkage: https://doi.org/10.1186/1750-0680-8-1
Online_Linkage: https://www.fs.usda.gov/research/treesearch/42806
Type_of_Source_Media: Online
Source_Time_Period_of_Content:
Time_Period_Information:
Single_Date/Time:
Calendar_Date: 2013
Source_Currentness_Reference:
Publication Date
Source_Citation_Abbreviation:
Wilson et al. (2013)
Source_Contribution:
The methods from this source were used to obtain phenology metrics from MODIS imagery.
Process_Step:
Process_Description:
We applied two approaches to modeling and mapping several attributes of forests in Puerto Rico and the Virgin Islands, including: (a) counts and relative basal areas of introduced, native, and endemic tree species; (b) relative basal areas of selected functional groups; (c) forest structure and biomass; and (d) individual tree species distributions. The two modeling methods that we use are a machine learning regression approach, and an approach that combines ordination with the machine learning method known as k-Nearest Neighbor. For the machine learning regression approach, we used the software Cubist. It is a data-mining tool that uses machine learning to build rule-based models with linear regression models at the end (i.e., leaf), of each ruleset. For the approach combining machine-learning with ordination, we used Gradient Phenological Gradient Nearest Neighbor (PGNN) (Wilson et al. 2012, 2013). Response variables were calculated from the U.S. Department of Agriculture (USDA) Forest Service Forest Inventory and Analysis (FIA) data, which is jointly implemented in Caribbean territories of the U.S. by the Southern Research Station and the International Institute of Tropical Forestry (Burrill et al. 2018). Plots were surveyed between the years 2001-2008. We developed a database of species traits (functional groups) from flora and expert knowledge to map the basal areas or relative basal areas of native, introduced or endemic species and functional groups of leaf thickness, putative nitrogen-fixing status and deciduousness (available in Helmer et al. 2023). As predictor variables for the mapping models, we used time series of multispectral satellite image composites, land-cover maps, topographic variables from a digital elevation model and maps of geology and long-term climate.

To evaluate the models, we used 10-fold cross validation to generate a dataset of observed vs. predicted values, from which we estimated correlation coefficients and mean absolute error (Helmer et al. 2018). Because an ordination of species basal areas parameterized PGNN modeling, PGNN generated maps of individual species were better overall that those generated with Cubist. However, Cubist models of forest structure and species groups were better overall than those from PGNN.

Imagery included time series of Landsat composites and MODIS-based phenology. Environmental data included climate, land cover, geology, topography and road distances (Helmer et al. 2018).


For complete details, see Helmer et al. (2018). For a discussion of how the composites were made, please see: Helmer and Ruefenacht (2005).

Helmer, Eileen H.; Ruefenacht, Bonnie. 2005. Cloud-free satellite image mosaics with regression trees and histogram matching. Photogrammetric Engineering & Remote Sensing. 71(9): 1079-1089. https://doi.org/10.14358/pers.71.9.1079 and https://www.fs.usda.gov/research/treesearch/30086
Process_Date: Unknown
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Spatial_Data_Organization_Information:
Direct_Spatial_Reference_Method: Raster
Raster_Object_Information:
Raster_Object_Type: Pixel
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Spatial_Reference_Information:
Horizontal_Coordinate_System_Definition:
Planar:
Grid_Coordinate_System:
Grid_Coordinate_System_Name: Universal Transverse Mercator
Universal_Transverse_Mercator:
UTM_Zone_Number: 19
Transverse_Mercator:
Scale_Factor_at_Central_Meridian: 0.9996
Longitude_of_Central_Meridian: -69
Latitude_of_Projection_Origin: 0
False_Easting: 500000
False_Northing: 0
Planar_Coordinate_Information:
Planar_Coordinate_Encoding_Method: Coordinate Pair
Coordinate_Representation:
Abscissa_Resolution: 28.5
Ordinate_Resolution: 28.5
Planar_Distance_Units: Meters
Geodetic_Model:
Horizontal_Datum_Name: World Geodetic System of 1984
Ellipsoid_Name: World Geodetic System of 1984
Semi-major_Axis: 6378137.0000
Denominator_of_Flattening_Ratio: 298.257224
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Entity_and_Attribute_Information:
Overview_Description:
Entity_and_Attribute_Overview:
Below you will find a list and description of the files included in this data publication.

VARIABLE DESCRIPTION FILE (1)

1. \Data\_variable_descriptions.csv: Comma-separated values (CSV) file containing a list and description of variables found in all data files. (A description of these variables is also provided in the metadata below.)

Columns include:

Filename = Name of data file
Variable = Name of variable
Description = Description of variable


DATA FILES (49)
All data files are ERDAS IMAGINE (IMG) georeferenced raster files.

Cubist Model Data Files

1. \Data\Cubist\Helmer_et_al_2018_cubist_aboveground_live_dry_biomass.img: Modeled distributions of aboveground live dry biomass measured in megagrams per hectare (metric tons per hectare) using the Cubist model.

2. \Data\Cubist\Helmer_et_al_2018_cubist_basal_area.img: Modeled distributions of basal area measured in square meters per hectare using the Cubist model.

3. \Data\Cubist\Helmer_et_al_2018_cubist_chartaceous.img: Modeled distributions of chartaceous species measured in percent basal area using the Cubist model.

4. \Data\Cubist\Helmer_et_al_2018_cubist_coriaceous.img: Modeled distributions of coriaceous species measured in percent basal area using the Cubist model.

5. \Data\Cubist\Helmer_et_al_2018_cubist_deciduous.img: Modeled distributions of deciduous and facultative species measured in percent basal area using the Cubist model.

6. \Data\Cubist\Helmer_et_al_2018_cubist_deciduous_nitrogen_fixing.img: Modeled distributions of deciduous nitrogen-fixing species measured in percent basal area using the Cubist model.

7. \Data\Cubist\Helmer_et_al_2018_cubist_endemic.img: Modeled distributions of endemic species measured in percent basal area using the Cubist model.

8. \Data\Cubist\Helmer_et_al_2018_cubist_endemic_number.img: Modeled distributions of number of endemic species measured in trees per hectare area using the Cubist model.

9. \Data\Cubist\Helmer_et_al_2018_cubist_evergreen.img: Modeled distributions of evergreen species measured in percent basal area using the Cubist model.

10. \Data\Cubist\Helmer_et_al_2018_cubist_evergreen_coriaceous.img: Modeled distributions of evergreen coriaceous species measured in percent basal area using the Cubist model.

11. \Data\Cubist\Helmer_et_al_2018_cubist_evergreen_to_near_deciduous.img: Modeled distributions of evergreen-to-near-deciduous species measured in percent basal area using the Cubist model.

12. \Data\Cubist\Helmer_et_al_2018_cubist_height.img: Modeled distributions of average tree heights in meters using the Cubist model.

13. \Data\Cubist\Helmer_et_al_2018_cubist_introduced.img: Modeled distributions of introduced species measured in percent basal area using the Cubist model.

14. \Data\Cubist\Helmer_et_al_2018_cubist_introduced_number.img: Modeled distributions of introduced species measured in trees per hectare using the Cubist model.

15. \Data\Cubist\Helmer_et_al_2018_cubist_native.img: Modeled distributions of native species measured in percent basal area using the Cubist model.

16. \Data\Cubist\Helmer_et_al_2018_cubist_native_number.img: Modeled distributions of native species measured in trees per hectare using the Cubist model.

17. \Data\Cubist\Helmer_et_al_2018_cubist_nitrogen_fixing.img: Modeled distributions of nitrogen-fixing species measured in percent basal area using the Cubist model.

18. \Data\Cubist\Helmer_et_al_2018_cubist_non_nitrogen_fixing.img: Modeled distributions of non-nitrogen-fixing species measured in percent basal area using the Cubist model.

19. \Data\Cubist\Helmer_et_al_2018_cubist_Prestoea_acuminata.img: Modeled distributions of Prestoea acuminata as measured by percent basal area using the Cubist model.

20. \Data\Cubist\Helmer_et_al_2018_cubist_Spathodea_campanulata.img: Modeled distributions of Spathodea campanulata as measured by percent basal area using the Cubist model.

21. \Data\Cubist\Helmer_et_al_2018_cubist_subcoriaceous.img: Modeled distributions of subcoriaceous species measured in percent basal area using the Cubist model.

22. \Data\Cubist\Helmer_et_al_2018_cubist_trees_per_hectare.img: Modeled distributions of the number of trees per hectare using the Cubist model.


Imagery and Geology Data Files

23-26. \Data\Imagery_and_Geology\YYYY_mosaic_scene_extents_final.img: IMG georeferenced raster files (4) containing the extent of each Landsat scene that makes up the YYYY composite, where YYYY = 1980, 1985, 1990, 2000.

Attributes include:

OID = Internal feature numbers generated automatically by Esri
Value = Unique identifier generated automatically by Esri
Count = Value pixel count
Red = RGB colormap code
Green = RGB colormap code
Blue = RGB colormap code
Opacity = RGB colormap code
Scene Date = Date the Landsat imagery was taken


27. \Data\Imagery_and_Geology\geology.img: IMG georeferenced raster file containing a map of geologic substrate.

Attributes include:

OID = Internal feature numbers generated automatically by Esri
Value = Unique identifier generated automatically by Esri
Red = RGB colormap code
Green = RGB colormap code
Blue = RGB colormap code
Count = Value pixel count
Short_name = Geology category type identifier
Opacity = RGB colormap code
Class_Names = Geology descriptive category type identifier


28-31. \Data\Imagery_and_Geology\landsat_mosaic_YYYY_with_mona.img: IMG georeferenced raster file containing Landsat MSS multispectral bands of cloud-minimized image composite centered on YYYY, where YYYY = 1980, 1985, 1990, 2000.


32. \Data\Imagery_and_Geology\spot_panchromatic_no_clouds.img: IMG georeferenced raster file containing SPOT panchromatic image composite for the year 1995 from normalizing image sections with linear regression.

Attributes include:

OID = Internal feature numbers generated automatically by Esri
Value = Unique identifier generated automatically by Esri
Count = Value pixel count


33. \Data\Imagery_and_Geology\spot_scene_extents_updated.img: IMG georeferenced raster file containing the extent of each SPOT scene that makes up the 1995 composite.

Attributes include:

OID = Internal feature numbers generated automatically by Esri
Value = Date that the SPOT imagery was taken
Count = Value pixel count
Red = RGB colormap code
Green = RGB colormap code
Blue = RGB colormap code
Opacity = RGB colormap code


PGNN Model Data Files

34. \Data\PGNN\Helmer_et_al_2018_PGNN_aboveground_live_dry_biomass.img: Modeled distributions of aboveground live dry biomass measured in megagrams per hectare (metric tons per hectare) using the PGNN model.

35. \Data\PGNN\Helmer_et_al_2018_PGNN_Acacia_farnesiana.img: Modeled distributions of Acacia farnesiana as measured by percent basal area using the PGNN model.

36. \Data\PGNN\Helmer_et_al_2018_PGNN_Bourriera_succulenta.img: Modeled distributions of Bourriera succulenta as measured by percent basal area using the PGNN model.

37. \Data\PGNN\Helmer_et_al_2018_PGNN_Bursera_simaruba.img: Modeled distributions of Bursera_simaruba as measured by percent basal area using the PGNN model.

38. \Data\PGNN\Helmer_et_al_2018_PGNN_Cecropia_schreberiana.img: Modeled distributions of Cecropia schreberiana as measured by percent basal area using the PGNN model.

39. \Data\PGNN\Helmer_et_al_2018_PGNN_Citrus_sinensis.img: Modeled distributions of Citrus sinensis as measured by percent basal area using the PGNN model.

40. \Data\PGNN\Helmer_et_al_2018_PGNN_Coccoloba_diversifolia.img: Modeled distributions of Coccoloba diversifolia as measured by percent basal area using the PGNN model.

41. \Data\PGNN\Helmer_et_al_2018_PGNN_Cordia_alliodora.img: Modeled distributions of Cordia alliodora as measured by percent basal area using the PGNN model.

42. \Data\PGNN\Helmer_et_al_2018_PGNN_Guapira_fragrans.img: Modeled distributions of Guapira fragrans as measured by percent basal area using the PGNN model.

43. \Data\PGNN\Helmer_et_al_2018_PGNN_Guarea_guidonia.img: Modeled distributions of Guarea guidonia as measured by percent basal area using the PGNN model.

44. \Data\PGNN\Helmer_et_al_2018_PGNN_Inga_laurina.img: Modeled distributions of Inga laurina as measured by percent basal area using the PGNN model.

45. \Data\PGNN\Helmer_et_al_2018_PGNN_Melicoccus_bijugatus.img: Modeled distributions of Melicoccus bijugatus as measured by percent basal area using the PGNN model.

46. \Data\PGNN\Helmer_et_al_2018_PGNN_Ocotea_leucoxylon.img: Modeled distributions of Ocotea leucoxylon as measured by percent basal area using the PGNN model.

47. \Data\PGNN\Helmer_et_al_2018_PGNN_Prestoea_acuminata.img: Modeled distributions of Prestoea acuminata as measured by percent basal area using the PGNN model.

48. \Data\PGNN\Helmer_et_al_2018_PGNN_Roystonea_borinquena.img: Modeled distributions of Roystonea borinquena as measured by percent basal area using the PGNN model.

49. \Data\PGNN\Helmer_et_al_2018_PGNN_Spathodea_campanulata.img: Modeled distributions of Spathodea campanulata as measured by percent basal area using the PGNN model.


SUPPLEMENTAL FILES (1)

1. \Supplements\ForestCharacteristics_CorrCoeff_AvgAbsError.pdf: Portable Document Format (PDF) file containing correlation coefficients and average absolute error information for the Cubist and PGNN models.
Entity_and_Attribute_Detail_Citation:
Helmer, Eileen H.; Ruzycki, Thomas S.; Wilson, Barry T.; Sherrill, Kirk R.; Lefsky, Michael A.; Marcano-Vega, Humfredo; Brandeis, Thomas J.; Erickson, Heather E.; Ruefenacht, Bonnie. 2018. Tropical deforestation and recolonization by exotic and native trees: Spatial patterns of tropical forest biomass, functional groups, and species counts and links to stand age, geoclimate, and sustainability goals. Remote Sensing. 10(11): 1724. https://doi.org/10.3390/rs10111724 and https://www.fs.usda.gov/research/treesearch/57626
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Metadata_Date: 20231113
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Contact_Organization: USDA Forest Service, International Institute of Tropical Forestry
Contact_Person: Eileen H. Helmer
Contact_Position: Principal Investigator
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Address: 240 West Prospect Road
City: Fort Collins
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