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    Author(s): Chiaki Hori; Jill Gaskell; Dan Cullen; Grzegorz Sabat; Philip E. Stewart; Kathleen Lail; Yi Peng; Kerrie Barry; Igor V Grigoriev; Annegret Kohler; Laure Fauchery; Francis Martin; Carolyn A. Zeiner; Jennifer M. Bhatnagar
    Date: 2018
    Source: Applied and Environmental Microbiology. 84(20): 1-41.
    Publication Series: Scientific Journal (JRNL)
    Station: Forest Products Laboratory
    PDF: Download Publication  (1.0 MB)

    Description

    Fungi play a key role cycling nutrients in forest ecosystems but the mechanisms remain uncertain. To clarify the enzymatic processes involved in wood decomposition, metatranscriptomics and metaproteomics of extensively decayed lodgepole pine by RNAseq and LC-MS/MS, respectively. Following de novo metatranscriptome assembly, 52,011 were searched for functional domains and homology to database entries.

    Publication Notes

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    Citation

    Hori, Chiaki; Gaskell, Jill; Cullen, Dan; Sabat, Grzegorz; Stewart, Philip E.; Lail, Kathleen; Peng, Yi; Barry, Kerrie; Grigoriev, Igor V.; Kohler, Annegret; Fauchery, Laure; Martin, Francis; Zeiner, Carolyn A.; Bhatnagar, Jennifer M. 2018. Multi-omic analyses of extensively decayed Pinus contorta reveal expression of a diverse array of lignocellulose-degrading enzymes. Applied and Environmental Microbiology. 84(20): 1-41.

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    Keywords

    Pinus contorta, wood decay, white rot, brown rot

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https://www.fs.usda.gov/treesearch/pubs/57112