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Multi-omic analyses of extensively decayed Pinus contorta reveal expression of a diverse array of lignocellulose-degrading enzymes

Author(s):

Chiaki Hori
Grzegorz Sabat
Philip E. Stewart
Kathleen Lail
Yi Peng
Kerrie Barry
Igor V Grigoriev
Annegret Kohler
Laure Fauchery
Francis Martin
Carolyn A. Zeiner
Jennifer M. Bhatnagar

Year:

2018

Publication type:

Scientific Journal (JRNL)

Primary Station(s):

Forest Products Laboratory

Source:

Applied and Environmental Microbiology. 84(20): 1-41.

Description

Fungi play a key role cycling nutrients in forest ecosystems but the mechanisms remain uncertain. To clarify the enzymatic processes involved in wood decomposition, metatranscriptomics and metaproteomics of extensively decayed lodgepole pine by RNAseq and LC-MS/MS, respectively. Following de novo metatranscriptome assembly, 52,011 were searched for functional domains and homology to database entries.

Citation

Hori, Chiaki; Gaskell, Jill; Cullen, Dan; Sabat, Grzegorz; Stewart, Philip E.; Lail, Kathleen; Peng, Yi; Barry, Kerrie; Grigoriev, Igor V.; Kohler, Annegret; Fauchery, Laure; Martin, Francis; Zeiner, Carolyn A.; Bhatnagar, Jennifer M. 2018. Multi-omic analyses of extensively decayed Pinus contorta reveal expression of a diverse array of lignocellulose-degrading enzymes. Applied and Environmental Microbiology. 84(20): 1-41.

Cited

Publication Notes

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https://www.fs.usda.gov/treesearch/pubs/57112