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Characterization of Dry-Season Phenology in Tropical Forests by Reconstructing Cloud-Free Landsat Time Series


Xiaolin Zhu
David Gwenzi
Melissa Collin
Sean Fleming
Jiaqi Tian
Elvia J. Meléndez-Ackerman
Jess K. Zimmerman



Publication type:

Scientific Journal (JRNL)

Primary Station(s):

International Institute of Tropical Forestry


Remote Sensing


Fine-resolution satellite imagery is needed for characterizing dry-season phenology in tropical forests since many tropical forests are very spatially heterogeneous due to their diverse species and environmental background. However, fine-resolution satellite imagery, such as Landsat, has a 16-day revisit cycle that makes it hard to obtain a high-quality vegetation index time series due to persistent clouds in tropical regions. To solve this challenge, this study explored the feasibility of employing a series of advanced technologies for reconstructing a high-quality Landsat time series from 2005 to 2009 for detecting dry-season phenology in tropical forests; Puerto Rico was selected as a testbed. We combined bidirectional reflectance distribution function (BRDF) correction, cloud and shadow screening, and contaminated pixel interpolation to process the raw Landsat time series and developed a thresholding method to extract 15 phenology metrics. The cloud-masked and gap-filled reconstructed images were tested with simulated clouds. In addition, the derived phenology metrics for grassland and forest in the tropical dry forest zone of Puerto Rico were evaluated with ground observations from PhenoCam data and field plots. Results show that clouds and cloud shadows are more accurately detected than the Landsat cloud quality assessment (QA) band, and that data gaps resulting from those clouds and shadows can be accurately reconstructed (R² = 0.89). In the tropical dry forest zone, the detected phenology dates (such as greenup, browndown, and dry-season length) generally agree with the PhenoCam observations (R² = 0.69), and Landsat-based phenology is better than MODIS-based phenology for modeling aboveground biomass and leaf area index collected in field plots (plot size is roughly equivalent to a 3 × 3 Landsat pixels). This study suggests that the Landsat time series can be used to characterize the dry-season phenology of tropical forests after careful processing, which will help to improve our understanding of vegetation–climate interactions at fine scales in tropical forests.


Zhu, Xiaolin; Helmer, Eileen H.; Gwenzi, David; Collin, Melissa; Fleming, Sean; Tian, Jiaqi; Marcano-Vega, Humfredo; Meléndez-Ackerman, Elvia J.; Zimmerman, Jess K. 2021. Characterization of Dry-Season Phenology in Tropical Forests by Reconstructing Cloud-Free Landsat Time Series. Remote Sensing. 13(23): 4736-.


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